Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60340892|gb|DN207865.1|DN207865EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST:
gi|60401186|gb|DN233993.1|DN233993EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST:
gi|30032252|gb|CB834103.1|CB834103EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST:
gi|60356003|gb|DN222976.1|DN222976EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST:
gi|78023917|gb|DV492304.1|DV492304EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST:
gi|60396895|gb|DN229714.1|DN229714EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaacccgtgaaagctttggggagctaacaacgaatggacaaatatttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGCCAGGAGAGATATCCGAAGTTGGTGTAGAATCAGACGGTGGAAAGGATG
agctaac putative branch site (score: 2)
acaaatatttatatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcaacagaacaacattaaccaaacccaacccgtgaaagctttggggagctaacaacgaatggacaaatatttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGCCAGGAGAGATATCCGAAGTTGGTGTAGAATCAGACGGTGGAAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG