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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttcatctaattttggttgaaataaaatttgtgtttgcaaatggtcaaataaatatcataatctgatggtttgagtattttcattggaatgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGCAGCAGGGCTTACAGTTGACCACCCGATAATGACGACTACTGACTTCTGG

Basic information

species Zea mays
transcript GRMZM2G117707_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117707_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g42960.2 (Oryza sativa), 3'ss of exon 1
------------tgttcatctaattttggttgaaataaaatttgtgtttgcaaatggtcaaataaatatcataatctgatggtttgagtattttcattggaatgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGCAGCAGGGCTTACAGTTGACCACCCGATAATGACGACTACTGACTTCTGG
            | | ||  |  |||  |||  |  | ||  | || ||| ||  |    |||  | |   | |||  ||| ||      | |  |||    |    | |||||||||||||||||| ||  ||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||||||
tttgccgctacatatgcaattg-tttacgttacagaataaaatatgcttgtaa-cgactgaatcgagag-gttatccaatgatt-----gtctctatt----ttgtgtatagGTACCGTGAATTGGCACACCGGGTGGATGAGGCACTTGGCTTCATGACTGCAGCAGGGCTAACAGTCGACCATCCGATAATGACAACAACTGACTTCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149112304|gb|EE295199.2|EE295199
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148929301|gb|EC875066.2|EC875066
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|4612877|gb|AI603716.1|AI603716
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCNCAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148986215|gb|EE029963.2|EE029963
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTTCATGACTG
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTT-CATGACTG
EST: gi|149109094|gb|EE293133.2|EE293133
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|149008651|gb|EE040836.2|EE040836
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|31357672|gb|CD442029.1|CD442029
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148944292|gb|EC889388.2|EC889388
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148969287|gb|EE020057.2|EE020057
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148966969|gb|EE018111.2|EE018111
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|71314137|gb|DR793684.1|DR793684
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|149078125|gb|EE166874.2|EE166874
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148953403|gb|EE152901.2|EE152901
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|149046653|gb|EE048042.2|EE048042
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCCTGAC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGAC
EST: gi|149106192|gb|EE291880.2|EE291880
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148928301|gb|EE284920.2|EE284920
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|149082849|gb|EE172074.2|EE172074
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTT
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTT
EST: gi|149087936|gb|EE287198.2|EE287198
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|76291135|gb|DV030703.1|DV030703
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148954653|gb|EC900100.2|EC900100
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTAACGTGAATTGGCCCATAGGGTGGAT
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGAT
EST: gi|29576946|gb|CB617058.1|CB617058
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|148968571|gb|EE019575.2|EE019575
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
EST: gi|149075537|gb|EE164067.2|EE164067
EST:     GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAG                         GTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC
genomic: GTCACACAGTGGAACCTCGATTTCATGGATCACAGCGAGCAAGGTGATAGgtgagaaaaa ... tgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaataaatatcataatctgatggtttgagtattttcattggaatgacatctagGTACCGTGAATTGGCCCATAGGGTGGATGAGGCTCTTGGGTTCATGACTGCAGCAGGGCTTACAGTTGACCACCCGATAATGACGACTACTGACTTCTGG
                atctgat  putative branch site (score: 4)
     taaatatcataatct  TA-rich tract