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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgtcccggatcctcgattcgtttggtttcggcgctccgttttggagacggggaccgtacatggtttatgatttgggtttgatgcatgtcgttgtcctctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTAT

Basic information

species Zea mays
transcript GRMZM2G117544_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117544_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g08520.1 (Oryza sativa), 3'ss of exon 2
gtgggtgtcccgga-tcctcgattcgtttggtttcggcgctccgttttggagacggggaccgtacatggtttatgatttgggtttgatgcatgtcgttgtcctctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTAT
||||||||||||||   ||||  |  |||| | | |   |  ||| ||| ||  |          | ||||| ||    || |||||||   | |||       | | |||||||| |||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||| |  | || || ||||| || || || |||||||| 
gtgggtgtcccggaactctcggat--tttgctctagaaccggcgtattg-agttgcttgttagttagggttt-tgggggggttttgatgtgcgccgtg------tgtttgcagGTACCAGCGGCTGGTGTTCAGGCACAAACTGTACCAGCTGAGGGAGGAGAGGGACATGAAGCCCCAGGCATTCGCTAGCCTCGTCTCCGCGCTCCTCTAC

upper sequence: GRMZM2G117544_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 2
gtgggtgtcccggatcctcgattcgtttggtttcggcgctccgttttggagacggggaccgtacatggtttatgatttgggtttgatgcatgtcgttgtcctctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTAT
           | ||| ||||||  | |     |    || | ||||              |   | ||||    | ||| |||  |  |     |     |   |||| || ||||| ||||| || ||  |||||||  |||| |||||    ||||||||||| |||||||||||||||||||| |||||||| || || || || |||
-------gtatgaatcatcgattgctctatcgccttgccttcatttt------------tttgttttgttttatttctggattttttaaaaaatttaaattttgatgtgtagATATCAACGGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211037010|gb|FL157523.1|FL157523
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034558|gb|FL157504.1|FL157504
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTG-TGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034566|gb|FL157512.1|FL157512
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034564|gb|FL157510.1|FL157510
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|89247888|gb|DY619674.1|DY619674
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211039454|gb|FL157534.1|FL157534
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGTTGGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGA
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTG-TTCAGGCACAAGTTGTACCAGCTGATGGAGGAGA
EST: gi|60356716|gb|DN223689.1|DN223689
EST:     ACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: ACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|71429028|gb|DR810078.1|DR810078
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|148995894|gb|EE035134.2|EE035134
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211032115|gb|FL157499.1|FL157499
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGTTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034563|gb|FL157509.1|FL157509
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034554|gb|FL157500.1|FL157500
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037006|gb|FL157519.1|FL157519
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|76288304|gb|DV027872.1|DV027872
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|76288303|gb|DV027871.1|DV027871
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|37379861|gb|CF626698.1|CF626698
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|89758446|gb|DY687621.1|DY687621
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|71429029|gb|DR810079.1|DR810079
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034565|gb|FL157511.1|FL157511
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTG-TGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|60395143|gb|DN228012.1|DN228012
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|88754192|gb|DY538333.1|DY538333
EST:     GACAAGCTCTACATCGGGCTCTGGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034561|gb|FL157507.1|FL157507
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGTTNGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGA
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGT-GTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGA
EST: gi|60398269|gb|DN231085.1|DN231085
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037004|gb|FL157517.1|FL157517
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGTTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037002|gb|FL157515.1|FL157515
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037003|gb|FL157516.1|FL157516
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034555|gb|FL157501.1|FL157501
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034559|gb|FL157505.1|FL157505
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037013|gb|FL157526.1|FL157526
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|148987000|gb|EE030820.2|EE030820
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211032114|gb|FL157498.1|FL157498
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211039452|gb|FL157532.1|FL157532
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211032113|gb|FL157497.1|FL157497
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGTTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|67012342|gb|CO441091.1|CO441091
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|89247887|gb|DY619673.1|DY619673
EST:     GGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037008|gb|FL157521.1|FL157521
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTG
EST: gi|211032111|gb|FL157495.1|FL157495
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034567|gb|FL157513.1|FL157513
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037015|gb|FL157528.1|FL157528
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034560|gb|FL157506.1|FL157506
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211263410|gb|FL474910.1|FL474910
EST:     TCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCMCAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: TCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|60337320|gb|DN204293.1|DN204293
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211034557|gb|FL157503.1|FL157503
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGTTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG
EST: gi|211037011|gb|FL157524.1|FL157524
EST:     GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCT                         GTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGAGGGAGGAGAG
genomic: GACAAGCTCTACATCGGGCTCTCGGGGCTCGCCACCGACGCCCAGACGCTgtgggtgtcc ... ctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgtacatggtttatgatttgggtttgatgcatgtcgttgtcctctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTAT
                       gtttgat  putative branch site (score: 5)
                                   tcgttgtcctcttt  putative PPT
           tttatgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtgtcccggatcctcgattcgtttggtttcggcgctccgttttggagacggggaccgtacatggtttatgatttgggtttgatgcatgtcgttgtcctctttgtgcagGTATCAGCGGCTGGTGTTCAGGCACAAGTTGTACCAGCTGATGGAGGAGAGGGACATGAAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC