1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcttgtacatcacttgtaaatcatcattagtttatggagaactgagtcctttaggtttgaagctgtttagaatgtatgctcatttagttggctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTT
species | Zea mays |
transcript | GRMZM2G117388_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTEST: gi|211262949|gb|FL116380.1|FL116380
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA GTMCTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTEST: gi|32919438|gb|CF024250.1|CF024250
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTEST: gi|32788829|gb|CD941065.1|CD941065
genomic: ACTAACCGACCTCGGATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
EST: GATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGA GTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
genomic: GATCCATCGACGCGTGAAGATGTCTTCGCCCGCCGAgtgagtccct ... gctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTT
gtcctttaggtttgaagctgtttagaatgtatgctcatttagttggctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTT
ctttttc CT-rich tract
tttagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgtacatcacttgtaaatcatcattagtttatggagaactgagtcctttaggtttgaagctgtttagaatgtatgctcatttagttggctttttcagGTACTACAAATCACTTCCACCTATAAGCAAGGCATATGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC