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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggcagtcagtcatgtaattatgccttggatcttgtacattacattttttgcactctgcgccacacattccaatgtttttaaaacgatggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGATGTAGGTTAAAGTTTTGCTGACTACTG

Basic information

species Zea mays
transcript GRMZM2G117388_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117388_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g09550.3 (Oryza sativa), 3'ss of exon 1
tcggcagtcagtcatgtaattatgccttggatcttgtacattacattttttgcactc-tgcgccacacattccaatgtttttaaaacga-tggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGATGTAGGTTAAAGTTTTGCTGACTACTG
   |||||  ||| | |  |||||  | | |  | | || |   |||| |||||||| |||        || |||| |            ||| |||| ||||||||||||||||| ||||| |||||||||||||     ||||| || || ||||| |||||||||||||||||                          
-ttgcagtttgtcctatgcttatgt-tggcaattggcacctgtaatttgttgcactcctgctattttactttcaatataagagctgtttctgggccttacagATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGAT--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211411635|gb|FL206598.1|FL206598
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211262949|gb|FL116380.1|FL116380
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCAT
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCAT
EST: gi|211265396|gb|FL116402.1|FL116402
EST:     ACCCATTACTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267826|gb|FL116414.1|FL116414
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTYCATGANA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|32788829|gb|CD941065.1|CD941065
EST:     CCCATTATTTCTCTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: CCCATTATTTCT-TTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211411636|gb|FL206599.1|FL206599
EST:     ACC-ATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|94476147|gb|EB705105.1|EB705105
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265391|gb|FL116397.1|FL116397
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCAC-ATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgcactctgcgccacacattccaatgtttttaaaacgatggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGATGTAGGTTAAAGTTTTGCTGACTACTG
                           aatgtttttaaaa  TA-rich tract