Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggcagtcagtcatgtaattatgccttggatcttgtacattacattttttgcactctgcgccacacattccaatgtttttaaaacgatggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGAT

Basic information

species Zea mays
transcript GRMZM2G117388_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117388_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g09550.3 (Oryza sativa), 3'ss of exon 1
tcggcagtcagtcatgtaattatgccttggatcttgtacattacattttttgcactc-tgcgccacacattccaatgtttttaaaacga-tggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGAT
   |||||  ||| | |  |||||  | | |  | | || |   |||| |||||||| |||        || |||| |            ||| |||| ||||||||||||||||| ||||| |||||||||||||     ||||| || || ||||| |||||||||||||||||
-ttgcagtttgtcctatgcttatgt-tggcaattggcacctgtaatttgttgcactcctgctattttactttcaatataagagctgtttctgggccttacagATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21389975|gb|BQ528024.1|BQ528024
EST:     ACCCATTATTTCTTTACTTAGATTACCCC-TGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTCTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267826|gb|FL116414.1|FL116414
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTYCATGANA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211262952|gb|FL116383.1|FL116383
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|60672357|gb|DN475118.1|DN475118
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211262954|gb|FL116385.1|FL116385
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265392|gb|FL116398.1|FL116398
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|33102075|gb|CF062035.1|CF062035
EST:     ACCCATTATTTCTTTACTTAGATTACCCCCTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028976|gb|FL127255.1|FL127255
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028975|gb|FL127254.1|FL127254
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028980|gb|FL127259.1|FL127259
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267823|gb|FL116411.1|FL116411
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|24934294|gb|CA452512.1|CA452512
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211262949|gb|FL116380.1|FL116380
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCAT
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCAT
EST: gi|211262955|gb|FL116386.1|FL116386
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265395|gb|FL116401.1|FL116401
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267821|gb|FL116409.1|FL116409
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265387|gb|FL116393.1|FL116393
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267816|gb|FL116404.1|FL116404
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267827|gb|FL116415.1|FL116415
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028978|gb|FL127257.1|FL127257
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267822|gb|FL116410.1|FL116410
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|32945665|gb|CF050484.1|CF050484
EST:     ACCCTTTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265385|gb|FL116391.1|FL116391
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|67018558|gb|CO447307.1|CO447307
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211262956|gb|FL116387.1|FL116387
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211411636|gb|FL206599.1|FL206599
EST:     ACC-ATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267820|gb|FL116408.1|FL116408
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267828|gb|FL116416.1|FL116416
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028983|gb|FL127262.1|FL127262
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028979|gb|FL127258.1|FL127258
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|93012514|gb|EB638034.1|EB638034
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265390|gb|FL116396.1|FL116396
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267824|gb|FL116412.1|FL116412
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028981|gb|FL127260.1|FL127260
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|67029845|gb|CO458594.1|CO458594
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|71438420|gb|DR819470.1|DR819470
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265388|gb|FL116394.1|FL116394
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267829|gb|FL116417.1|FL116417
EST:     ACCCATTACTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265396|gb|FL116402.1|FL116402
EST:     ACCCATTACTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211028977|gb|FL127256.1|FL127256
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|67040755|gb|CO467010.1|CO467010
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265394|gb|FL116400.1|FL116400
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|93015533|gb|EB641053.1|EB641053
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265384|gb|FL116390.1|FL116390
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267819|gb|FL116407.1|FL116407
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211262950|gb|FL116381.1|FL116381
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|71438460|gb|DR819510.1|DR819510
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265391|gb|FL116397.1|FL116397
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCAC-ATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|71767312|gb|DR965249.1|DR965249
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265393|gb|FL116399.1|FL116399
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265386|gb|FL116392.1|FL116392
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211267825|gb|FL116413.1|FL116413
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|32788829|gb|CD941065.1|CD941065
EST:     CCCATTATTTCTCTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: CCCATTATTTCT-TTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211265383|gb|FL116389.1|FL116389
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|111145818|gb|EE257958.1|EE257958
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|32932771|gb|CF037583.1|CF037583
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 119

TGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGAT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 118

TGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 166

TGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 278

TGGGACATTGTGTTTCTTTACCACCGTGCTAGTTCAGCTCCAGATTTTGCACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgcactctgcgccacacattccaatgtttttaaaacgatggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGAT
                           aatgtttttaaaa  TA-rich tract