Sequence
atgc intronic sequence ATGC exonic sequence...tcttgaagaattgagtggtctgatatattgagtcattagttttatctggaaactgaaatgaacattgtggtctgaactctgaagtgattacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G116952_T07 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g15430.4 (Oryza sativa), 3'ss of exon 2
-------tcttgaagaattgagtggtctgatatattg-agtcattagttttatctggaaactgaaatgaacattgtggtctgaactctgaagtgattacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
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taagtaaatttgaagaaatgcgtgatgcgagatcttatagtacttagttttgtgctaaatttgatatggatgtattaa--------ctgaggtgattatacattacagGCCTAGCATATTGGCTTATCATTTCAAGACAGCTGTAGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCACAGCACT
upper sequence: GRMZM2G116952_T07 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G07570.2 (Glycine max), 3'ss of exon 2
--------tcttgaagaattgagtggtctgatatattgagtcat-tagttttatctggaaactgaaatgaacattgtggtctgaactctgaagtgattacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
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agattcagttttgaa-aatttagcgttc--aatcatcaattcctatgacttaatttggaaat---aacttatgaagttg-ctaagcttgcctgtacttgttta--acagATTGAAGCTACTTGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCT
upper sequence: GRMZM2G116952_T07 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G07690.1 (Glycine max), 3'ss of exon 1
---tcttgaagaattgagtggtctgatatattgagtcattagttttatctggaaactgaaatgaacattgtggt--ctgaactctgaagtgattacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
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cagttttgaagattt-agtgttcaattcaatc--atcaattcctatgacttaatttggaaataacttatgaagttgctaagcatgcctgcacttgctta--acagATTGAAGCTACTAGTAGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTATTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCT
upper sequence: GRMZM2G116952_T07 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA17G30020.1 (Glycine max), 3'ss of exon 2
tcttgaagaattgagtggtctgatatattgagtcattagttttat---ctggaaactgaaatgaacattgtggt--ctgaactctgaagtgattacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
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--tttgatattttaatgtattgtttcat--gattataactttcaagtattggaatatgtaatagcttatgaagctgctaagcccttgt-tcttcttgcaccacagAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCT
upper sequence: GRMZM2G116952_T07 (Zea mays), 3'ss of exon 2
lower sequence: Vv11s0016g04450.t01 (Vitis vinifera), 3'ss of exon 2
-------tcttgaagaattgagtggtctgatatattgagtcattagttttatctggaaactgaaatgaacattgtggtctgaactctgaagtg-attacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
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acatagtgtttgtaaaactgtgtttctatgcatgctttgt-attaga---atcttaattatgaaaaga----tgtagtttccctggtaatatctattcttctccacagGCTCAGTGTATTAGCAGACTACTATAAGATGGCCCTGGATTGCTTCTTTGCTGTGTGGTTTGTGGTTGGTAATGTATGGATTTTTGGAGGACACTCCTCT
upper sequence: GRMZM2G116952_T07 (Zea mays), 3'ss of exon 2
lower sequence: Vv09s0002g05120.t01 (Vitis vinifera), 3'ss of exon 2
tcttgaagaattgagtggtctgatatattgagtcattagttttatctggaaactgaaatgaacattgtggtc-tgaactctgaag-tgattacatat-tacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
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--tctgatagttaattattttaa-acttttaacccttttttgtatccattcaataatttatatattgtatcggttaatgatgtagctgatttctgatacccagGTTCAGTGGAATGGTGGACCATTTTAAGATGGCCTTGGACTGCTTCTTTGCAGTGTGGTTTGTTGTGGGCAATGTGTGGATATTTGGAGGTCACTCTTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71427247|gb|DR808297.1|DR808297EST: ACCAGTGGTATTGTTTTGCATCTTGGATGTATCTCAATTTCTTGCCCAAG GCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGC
genomic: ACCAGTGGTATTGTTTTGCATCTTGGATGTATCTCAATTTCTTGCCCAAGgtaactttta ... catattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggaaactgaaatgaacattgtggtctgaactctgaagtgattacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
attacatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttgaagaattgagtggtctgatatattgagtcattagttttatctggaaactgaaatgaacattgtggtctgaactctgaagtgattacatattacagGCTTAGTGTGCTGGCTTATCACTTCAAGACAGGTGTTGACTGTTTCTTTGCTGTATGGTTTGTTGTTGGCAATGTGTGGATTTTTGGTGGGCGCAGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG