Sequence
atgc intronic sequence ATGC exonic sequencegtcaatatcttcagtccccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G116840_T06 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 3'ss of exon 3
-----------gtcaatatcttcagtccccattttgataaaaattttcaattga-tttttagtgtgcatcgggttttagtgccttcccttatgttgttttattttttt-cagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
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gtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtagGTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAG
upper sequence: GRMZM2G116840_T06 (Zea mays), 3'ss of exon 1
lower sequence: AT5G42990.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcaatatcttcagtccccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcc----cttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
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-tgcatgttttaggtcagagaattagtttgagatat--agtgacattttctctacttggttttgtgctgtgttctgattttcatgtgtttggtttttgatcagGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGCAATGGACATATTTGTTTAG
upper sequence: GRMZM2G116840_T06 (Zea mays), 3'ss of exon 1
lower sequence: AT1G75440.1 (Arabidopsis thaliana), 3'ss of exon 3
gtca----atatcttcagtc--cccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
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gtcatggaatgttttgatctgtctcgagttgacttgagttctctgttctttacttct-tgtttgcgtttgtaatgtttttttt----tttttaaatattgtacagGTGATTTTTCTTCATCCAGCTCCTCTGCATCCTCACATTTACAGCAATGGGCATATTTGTCTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31356418|gb|CD440775.1|CD440775EST: ACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGA
genomic: ACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAGgtcaatatct ... tttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAG
ccttcccttatgttgt CT-rich tract
ttatgttgttttattt TA-rich tract