Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcgccgcgccgcctaacatctatcacaaaacccggccagaccatgcatggaagaaatctctcttttttcacgagtttttatatatagacctataataatagttataagcatatgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAC

Basic information

species Zea mays
transcript GRMZM2G116658_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116658_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g35760.1 (Oryza sativa), 3'ss of exon 2
gtatgtcgccgcgccgcctaacatctatcacaaaacccggccagaccatgcatggaagaaatctctcttttttcacgagtttttatatatagacctataataatagttataagcatatgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAC
          |    || | | |      |  | | | ||  | |  ||  |  |||| ||  |||  ||||| | |  ||||| | | |  || |   ||                  |  |||| |||||||||||||| || || || |||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| 
----------gtaa-gcgtcaaactctcgatgacatcaggaaaaaaaat--aacgaagcaaattctgatttttgatggttttttttttctctacgtgcgat------------------cgtgcagCGTGTTCAAGGAGTGTCCACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTCAACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76913686|gb|DV165223.1|DV165223
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|74239640|gb|DT647554.1|DT647554
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|50324567|gb|CO519693.1|CO519693
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|74240987|gb|DT648901.1|DT648901
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71767034|gb|DR964971.1|DR964971
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149108009|gb|EE292364.2|EE292364
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|91877000|gb|EB406957.1|EB406957
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149107365|gb|EE189243.2|EE189243
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|84969616|gb|DT652022.2|DT652022
EST:     ATACCACCCCCACACCCCGCAGCAAATCCAAGAACTAGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: ATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149075614|gb|EE164152.2|EE164152
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148955640|gb|EC901309.2|EC901309
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149095883|gb|EE181543.2|EE181543
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71774500|gb|DR972378.1|DR972378
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71422373|gb|DR805707.1|DR805707
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71761496|gb|DR959433.1|DR959433
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149086823|gb|EE176369.2|EE176369
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|88746181|gb|DY530322.1|DY530322
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|93281129|gb|EB673393.1|EB673393
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|91052677|gb|EB163095.1|EB163095
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149072236|gb|EE160486.2|EE160486
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148941557|gb|EC886493.2|EC886493
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71767645|gb|DR965582.1|DR965582
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78086118|gb|DV514511.1|DV514511
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76287426|gb|DV026994.1|DV026994
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78115150|gb|DV533538.1|DV533538
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71440277|gb|DR821327.1|DR821327
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|86465791|gb|DY232164.1|DY232164
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71771318|gb|DR969255.1|DR969255
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|93283652|gb|EB675916.1|EB675916
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|101389758|gb|EB816813.1|EB816813
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|91878869|gb|EB408826.1|EB408826
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71769291|gb|DR967228.1|DR967228
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148954064|gb|EC899463.2|EC899463
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71450348|gb|DR831398.1|DR831398
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71433203|gb|DR814253.1|DR814253
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71432526|gb|DR813576.1|DR813576
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76014434|gb|DT941604.1|DT941604
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76289817|gb|DV029385.1|DV029385
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71319101|gb|DR796312.1|DR796312
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148950107|gb|EC895643.2|EC895643
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|74232260|gb|DT640174.1|DT640174
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149007374|gb|EE040227.2|EE040227
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|89757984|gb|DY687335.1|DY687335
EST:     AGAAGCGGTACCACCGCCACACACCGCAGCAAATCC-AGAAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAG-AACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71765333|gb|DR963270.1|DR963270
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|50325582|gb|CO520708.1|CO520708
EST:     CGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: CGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149099741|gb|EE185794.2|EE185794
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148959963|gb|EE153202.2|EE153202
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149027254|gb|EE046451.2|EE046451
EST:     ACACCGCAGCAAATCCAAGAACTCGAAGC                         TG-GTTCAAAGGAGGGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCA
genomic: ACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTC-AAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCA
EST: gi|71310437|gb|DR791524.1|DR791524
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148965442|gb|EE016248.2|EE016248
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148962577|gb|EE013455.2|EE013455
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76925139|gb|DV170299.1|DV170299
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78110554|gb|DV528964.1|DV528964
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|50339536|gb|CO534662.1|CO534662
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71306808|gb|DR789559.1|DR789559
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76932851|gb|DV173203.1|DV173203
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76284890|gb|DV024458.1|DV024458
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149108578|gb|EE189722.2|EE189722
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71422948|gb|DR805902.1|DR805902
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71326764|gb|DR800043.1|DR800043
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78106731|gb|DV525149.1|DV525149
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|93015636|gb|EB641156.1|EB641156
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacgagtttttatatatagacctataataatagttataagcatatgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAGCAAGCGGCTCAACCTAGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAAC
      agtttttatatataga  TA-rich tract