1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaattattgaataattgtcttatcatcgagattgagtcatgtgtacaactatgcacattaaaacttgaaacatgatctgcagATCTCGCTCTTGCAAGGGTGGAAACGGAGAAGAGGAACTCTCTGATTAAAGCATGGGAAGATAATGAGAAGGCAAAAGCTGATAACAA
species | Zea mays |
transcript | GRMZM2G116538_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTCCCGAGAAGCCTATCGCTGAGAAGCAAGGGGGCTCCAGTATCAGAG ATCTCGCTCTTGCAAGGGTGGAAACGGAGAAGAGGAACTCTCTGATTAAAG
genomic: TACTCCTGAGAAGCCTATCGCTGAGAAGCAAGGGGGCTCCAGTATCAGAGgtaattattg ... tgatctgcagATCTCGCTCTTGCAAGGGTGGAAACGGAGAAGAGGAACTCTCTGATTAAAG
gagattgagtcatgtgtacaactatgcacattaaaacttgaaacatgatctgcagATCTCGCTCTTGCAAGGGTGGAAACGGAGAAGAGGAACTCTCTGATTAAAGCATGGGAAGATAATGAGAAGGCAAAAGCTGATAACAA
attaaaacttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattattgaataattgtcttatcatcgagattgagtcatgtgtacaactatgcacattaaaacttgaaacatgatctgcagATCTCGCTCTTGCAAGGGTGGAAACGGAGAAGAGGAACTCTCTGATTAAAGCATGGGAAGATAATGAGAAGGCAAAAGCTGATAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT