1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagcgcctcgcctttggcattgcgtggatggttgtttcatagaggtttgcttgggtcctgtggacggattgctcggttgtctttctcatttggtggtcttggtactctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGAGCTCGCAG
species | Zea mays |
transcript | GRMZM2G116427_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|21330705|gb|BQ486086.1|BQ486086
genomic: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: GCCTCGAGAGCATCTCCGAGTCCTTCGGCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAEST: gi|32869175|gb|CF008857.1|CF008857
genomic: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGA
EST: GGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|21390595|gb|BQ528644.1|BQ528644
genomic: GGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|21480787|gb|BQ577470.1|BQ577470
genomic: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|26455505|gb|CA827088.1|CA827088
genomic: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|22546799|gb|BU099110.1|BU099110
genomic: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: TCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|21481481|gb|BQ578164.1|BQ578164
genomic: TCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|87154790|gb|DY399579.1|DY399579
genomic: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGEST: gi|32906186|gb|CF010999.1|CF010999
genomic: GCCTCGAGAGCATCTCCGAGTCCTTCGTCTCCAAGGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
EST: GGCCGAGATGCAGAAG AGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
genomic: GGCCGAGATGCAGAAGgcaagcgcct ... ctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAG
ggacggattgctcggttgtctttctcatttggtggtcttggtactctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGAGCTCGCAG
ctctgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcgcctcgcctttggcattgcgtggatggttgtttcatagaggtttgcttgggtcctgtggacggattgctcggttgtctttctcatttggtggtcttggtactctgtttgcagAGTGAGATGCTGCAGGAGTCCAATATCTCCAAGTTCAAGTCCCAAGTGCAGAGCTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT