1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caagtgtggtgaggtgacagtgcgtctataaacagataatgatagcaaagaaggcaggttttcctccaagtgttaataaaatgtggtattcattttgcagCCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATGTGGCATTATGTATGAAGCTGTTTGAGCACAAACCTTTCGATGCAAGGAC
species | Zea mays |
transcript | GRMZM2G116053_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCGTCATCTGCAACAAGGCTCTCATGAGCTCCCTTGGCTTCAACTTCG CCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATGEST: gi|67020057|gb|CO448806.1|CO448806
genomic: CATCGTCATCTGCAACAAGGCTCTCATGAGCTCCCTTGGCTTCAACTTCGgtatgagatc ... cattttgcagCCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATG
EST: CATCGTCATCAGCAACAAGGCTCTCATGAGCTCCCTTGGCTTCAACTTCG CCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATG
genomic: CATCGTCATCTGCAACAAGGCTCTCATGAGCTCCCTTGGCTTCAACTTCGgtatgagatc ... cattttgcagCCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATG
caaagaaggcaggttttcctccaagtgttaataaaatgtggtattcattttgcagCCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATGTGGCATTATGTATGAAGCTGTTTGAGCACAAACCTTTCGATGCAAGGAC
tgttaat putative branch site (score: 171)
ttcatttt putative PPT
aagtgttaataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtgtggtgaggtgacagtgcgtctataaacagataatgatagcaaagaaggcaggttttcctccaagtgttaataaaatgtggtattcattttgcagCCACTACTTTGACAAGCTGGCATCTCCTGGTTACATTCTGTTCTCTCCATGTGGCATTATGTATGAAGCTGTTTGAGCACAAACCTTTCGATGCAAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - tgtggtg
- - - - - - - - - -gtgcgtc
- - - - - - - - - - - - - - -aaacaga
- - - - - - - - - - - - - - - - - - - - - - gcaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa