1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...agttccacatggttaatatgctcttttaagtatgtttacttctgttagtacattttattatttattgagaaagatagctcatgcatcttgcttttaccagGGATTGGATGGAAATCATGGAAGAAACGTTGGTTCATCCTCACAAGAACATCATTGGTTTTCTTCAAGAGTGATCCT
species | Zea mays |
transcript | GRMZM2G115975_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTTTCAAGAGTGGGCCTCTTTTCATATCATCCAAAG GGATTGGATGGAAATCATGGAAGAAACGTTGGTTCATCCTCACAAGAACATEST: gi|50327514|gb|CO522640.1|CO522640
genomic: GTTTTCAAGAGTGGGCCTCTTTTCATATCATCCAAAGgtaatccctt ... cttttaccagGGATTGGATGGAAATCATGGAAGAAACGTTGGTTCATCCTCACAAGAACAT
EST: GTTTTCAAGAGTGGGCCTCTTTTCATATCATCCAAAG GGATTGGATGGAAATCATGGAAGAAACGTTGGTTCATCCTCACAAGAACAT
genomic: GTTTTCAAGAGTGGGCCTCTTTTCATATCATCCAAAGgtaatccctt ... cttttaccagGGATTGGATGGAAATCATGGAAGAAACGTTGGTTCATCCTCACAAGAACAT
tagtacattttattatttattgagaaagatagctcatgcatcttgcttttaccagGGATTGGATGGAAATCATGGAAGAAACGTTGGTTCATCCTCACAAGAACATCATTGGTTTTCTTCAAGAGTGATCCT
tcttgctttt CT-rich tract
attttattatttattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttccacatggttaatatgctcttttaagtatgtttacttctgttagtacattttattatttattgagaaagatagctcatgcatcttgcttttaccagGGATTGGATGGAAATCATGGAAGAAACGTTGGTTCATCCTCACAAGAACATCATTGGTTTTCTTCAAGAGTGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -cacatgg
- - - - - - - - tatgctc
- - - - - - - - - - - - - - - - - - -acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca