1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttatagattattagattttgatcaaagccacgtgggactaaattttctttgtataactaaagcagtctgatggagtcaccttctggtggttgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGTCCAAAGAAAAAACTCCTAAAAGCAGC
species | Zea mays |
transcript | GRMZM2G115424_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|60400143|gb|DN232950.1|DN232950
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|26457236|gb|CA828819.1|CA828819
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|60342995|gb|DN209968.1|DN209968
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|76018651|gb|DT945821.1|DT945821
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCGGCATATATGAGGTTGTEST: gi|17969981|gb|BM276750.1|BM276750
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCEST: gi|60343251|gb|DN210224.1|DN210224
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCC
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|17970075|gb|BM276842.1|BM276842
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGAEST: gi|18964582|gb|BM661089.1|BM661089
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGA
EST: TCTG-TGCATTTTA-TTTGGAGC-AGGTTTGGATTCGACATGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|19821822|gb|BQ047846.1|BQ047846
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTCCCCAGCATATATGAGGTTGTEST: gi|149088113|gb|EE287286.2|EE287286
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: ACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|32857894|gb|CD997575.1|CD997575
genomic: ACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: GCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAGACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|31353558|gb|CD437915.1|CD437915
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTEST: gi|78544653|gb|DV622151.1|DV622151
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
EST: GGAGCAAGG-TTGGATTCGACAAGGAATCCAG GAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
genomic: GGAGCAAGGTTTGGATTCGACAAGGAATCCAGgtatccattt ... tgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
tctttgtataactaaagcagtctgatggagtcaccttctggtggttgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGTCCAAAGAAAAAACTCCTAAAAGCAGC
tataactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatagattattagattttgatcaaagccacgtgggactaaattttctttgtataactaaagcagtctgatggagtcaccttctggtggttgcgttgcagGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGTCCAAAGAAAAAACTCCTAAAAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - -gatcaaa
- - - - - - - - - - - - - -ccacgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctg