1 5' 3' | 2 5' 3' |
...gtatgctaaagcaatgagcggcagaactgcactatttttatccattattcgcagaaagatactaactgtagcttgcttcctccccacattttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTCAATACCCTTGCCGTCAGTGTGCTTGTGGTCGCGAAACTACCGAATATG
species | Zea mays |
transcript | GRMZM2G114911_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|78082275|gb|DV510687.1|DV510687
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|78081154|gb|DV509566.1|DV509566
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|32929560|gb|CF034372.1|CF034372
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|6681814|gb|AW287801.1|AW287801
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|78082274|gb|DV510686.1|DV510686
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|14245575|gb|BG874157.1|BG874157
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|211453252|gb|FL452574.1|FL452574
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|78081153|gb|DV509565.1|DV509565
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|71445808|gb|DR826858.1|DR826858
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|32929853|gb|CF034665.1|CF034665
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGGTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|18178373|gb|BM379583.1|BM379583
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|211414185|gb|FL206614.1|FL206614
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AACAGCTTACTCGTAATAGGAAGTTCCTCATTGGGTGT-CCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTEST: gi|60397481|gb|DN230297.1|DN230297
genomic: AACAGCTTACTCGTAATAGGAAGTTCCTCATTGT-TGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
EST: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
tattcgcagaaagatactaactgtagcttgcttcctccccacattttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTCAATACCCTTGCCGTCAGTGTGCTTGTGGTCGCGAAACTACCGAATATG
tactaac putative branch site (score: 105)
cttgcttcctccccac putative PPT
attttctt TA-rich tract