1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacacctctctcctacagttacttctgttgaatttcgtctcgttgtgggttatttctggcgtcttaactttagtaatgccccatttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATTATTAACAAGGATGGCAAGCCCTACATTCAGGTCAAGATCAAGGATGGG
species | Zea mays |
transcript | GRMZM2G114793_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGGACATGAAACTTGTTCCCCTACA-GEST: gi|211043418|gb|FL322281.1|FL322281
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGG-ACATGAAACTTGTTCCC-TACAAG
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211399188|gb|FL334000.1|FL334000
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211287645|gb|FL366221.1|FL366221
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|149079422|gb|EE168400.2|EE168400
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|32843508|gb|CD983189.1|CD983189
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|148947395|gb|EC892803.2|EC892803
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211153937|gb|FL327665.1|FL327665
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211437934|gb|FL338200.1|FL338200
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAAEST: gi|211537351|gb|FL321049.1|FL321049
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAA
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211272691|gb|FL347693.1|FL347693
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|32929450|gb|CF034262.1|CF034262
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211465040|gb|FL331928.1|FL331928
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAWA GTTCGCGGACAAGGAAGTCEST: gi|211335770|gb|FL352931.1|FL352931
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTC
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTANCA-GAEST: gi|148990654|gb|EE032048.2|EE032048
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTA-CAAGA
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211362047|gb|FL326991.1|FL326991
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|148957724|gb|EC903848.2|EC903848
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211100817|gb|FL317192.1|FL317192
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211198013|gb|FL335635.1|FL335635
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|211220897|gb|FL350387.1|FL350387
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATEST: gi|101399980|gb|EB821837.1|EB821837
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
EST: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAA GTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
genomic: GTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctc ... atttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGAT
tctcgttgtgggttatttctggcgtcttaactttagtaatgccccatttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATTATTAACAAGGATGGCAAGCCCTACATTCAGGTCAAGATCAAGGATGGG
tcttaac putative branch site (score: 1401)
ccccattt putative PPT
ttaactttagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacctctctcctacagttacttctgttgaatttcgtctcgttgtgggttatttctggcgtcttaactttagtaatgccccatttatttagGTTCGCGGACAAGGAAGTCCAGAGGGACATGAAACTTGTTCCCTACAAGATTATTAACAAGGATGGCAAGCCCTACATTCAGGTCAAGATCAAGGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
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