1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cagtgttcatcagctttgtgaaatcagtttacatcattcttcggatctcaatagtcaacgtgtagtgacaataaaataattttggtttttaatccagaagGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG
species | Zea mays |
transcript | GRMZM2G114758_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAGAAGEST: gi|26456351|gb|CA827934.1|CA827934
genomic: TGATGATGATGGCCTTGGGACATCACTTCCAAGGC---AAGAAGgtacacgttt ... aatccaga
EST: TG-TGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAGAAGEST: gi|71304851|gb|DR788540.1|DR788540
genomic: TGATGATGATGGCCTTGGGACATCACTTCCAAGGC---AAGAAGgtacacgttt ... aatccaga
EST: TGATGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAG GCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGGEST: gi|78118561|gb|DV536945.1|DV536945
genomic: TGATGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAGgtacacgttt ... aatccagaagGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG
EST: TGATGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAGAAGEST: gi|91048770|gb|EB159188.1|EB159188
genomic: TGATGATGATGGCCTTGGGACATCACTTCCAAGGC---AAGAAGgtacacgttt ... aatccaga
EST: TGATGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAGAAGEST: gi|213167931|gb|FM194811.1|FM194811
genomic: TGATGATGATGGCCTTGGGACATCACTTCCAAGGC---AAGAAGgtacacgttt ... aatccaga
EST: TGATGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAG GCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG
genomic: TGATGATGATGGCCTTGGGACATCACTTCCAAGGCAAGAAGgtacacgttt ... aatccagaagGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG
tctcaatagtcaacgtgtagtgacaataaaataattttggtttttaatccagaagGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG
ttttaat putative branch site (score: 3)
tgacaataaaataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgttcatcagctttgtgaaatcagtttacatcattcttcggatctcaatagtcaacgtgtagtgacaataaaataattttggtttttaatccagaagGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT