Sequence
atgc intronic sequence ATGC exonic sequencegtaagtggaaggacaccttggtgggtctaggttctagatttgcgttgtgatagtgctgatgcttttgctgttgaagGTTGCTAGTTGGGGAGCTTACTTGCTGAAGAGAAACATCATCGCCATGTCATTTGCGCCGAGAGACACGCACGAAGCTCAGGTGCAATTCGCGCTGGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G114570_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g36690.4 (Oryza sativa), 3'ss of exon 2
gtaagtgga-aggacaccttggtgggtctaggttctagattt---gcgttgtgata--gtgctgatgcttttgc-----tgttgaagGTTGCTAGTTGGGGAGCTTACTTGCTGAAGAGAAACATCATCGCCATGTCATTTGCGCCGAGAGACACGCACGAAGCTCAGGTGCAATTCGCGCTGGAAA
||||| ||| | || | ||||| ||| | || || ||| | ||||| |||||||||| ||| |||||||||| ||||| ||||||||||||||||| |||||| | || ||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||
gtaaggggagaagatcagaagaaacatctagcttcaggtttcttgatgtcgtggcaatgtgctcatgcttttgcatcttctttgcagGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAACATCCTTGCAATGTCGTTTGCACCGAGGGACACCCATGAAGCTCAGGTGCAATTCGCGCTGGAGC
upper sequence: GRMZM2G114570_T04 (Zea mays), 3'ss of exon 3
lower sequence: PP1S336_61V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------gtaagtggaaggacaccttggtgggtctaggttctagatttgcgttgtgatagtgc-tgatgcttttgctgttga-------agGTTGCTAGTTGGGGAGCTTACTTGCTGAAGAGAAACATCATCGCCATGTCATTTGCGCCGAGAGACACGCACGAAGCTCAGGTGCAATTCGCGCTGGAAA
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gttagtttctaccctgcgtccaactttgctgttaagcaaaacacccatactcgagttcctgacgccgcgcattttccttctctgtagtgtagaaatttgtcgagttctcatttctgattgtaccagGTGGCGAGTTGGGGAGCCTACTTGTTGAAGAAGAACATTCTTGCCATGTCATTTGCTCCAAGAGACACCCACGTATCTCAAATCCAGTTTGCTCTCGAGA
upper sequence: GRMZM2G114570_T04 (Zea mays), 3'ss of exon 3
lower sequence: PP1S43_199V6.2 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------gtaagtggaaggacaccttggtgggtctaggttctagatttgcgttgtgatagtgctgatgcttttgctgttgaagGTTGCTAGTTGGGGAGCTTACTTGCTGAAGAGAAACATCATCGCCATGTCATTTGCGCCGAGAGACACGCACGAAGCTCAGGTGCAATTCGCGCTGGAAA
| | | |||| | || | |||||| || | | | | || || | | | |||| |||| || ||||||||||| |||||| |||||| |||||| | |||||||||||||| ||||||||||| || | |||| | ||||| || || || |
gtacgttccttctctgctcttcactttctaataattgacatactcatcttccgagtttctgatgacaaactt-tgtactttcattctaggaa-acgccat-agaatactcattcctct-ctgtatcagGTGGCGAGTTGGGGAGCCTACTTGTTGAAGAAAAACATTCTGGCCATGTCATTTGCACCGAGAGACACCCATATATCTCAAATTCAATTTGCCCTTGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgggtctaggttctagatttgcgttgtgatagtgctgatgcttttgctgttgaagGTTGCTAGTTGGGGAGCTTACTTGCTGAAGAGAAACATCATCGCCATGTCATTTGCGCCGAGAGACACGCACGAAGCTCAGGTGCAATTCGCGCTGGAAA
tgctgat putative branch site (score: 3)
cttttgct CT-rich tract
tagattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtggaaggacaccttggtgggtctaggttctagatttgcgttgtgatagtgctgatgcttttgctgttgaagGTTGCTAGTTGGGGAGCTTACTTGCTGAAGAGAAACATCATCGCCATGTCATTTGCGCCGAGAGACACGCACGAAGCTCAGGTGCAATTCGCGCTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA