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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaagtaaatcttctaggagtagctcgttcatttcggttttaggaaaattgaccatgttacatgcttggggacagCGGATGCTAAGAAGCAATATCCGGAGCTGTACACCAAATGGAGGGAGGACCCTGCAAATTTTCATGTCAATGGCATATACCCGATTAGGAAGTTGTGGGG

Basic information

species Zea mays
transcript GRMZM2G114550_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114550_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g13570.2 (Oryza sativa), 3'ss of exon 4
--------gtaatgaagtaaatcttctaggagtagctcgttcatttcggttttaggaaaattgaccatgttacatgcttggggacagCGGATGCTAAGAAGCAATATCCGGAGCTGTACACCAAATGGAGGGAGGACCCTGCAAATTTTCATGTCAATGGCATATACCCGATTAGGAAGTTGTGGGG
         |  |     ||  |||| |    |  | |  | | |     |||| | ||| ||||| |  || || ||||| | ||||||||||||||||| ||||||| ||| ||||||||| |||| ||||||| ||| |||||||  | |||||||||||||||||  || ||||||| |||||
gtatgttgttgcttgtacaagccttcaatctctt-cactcttactgtccatttacgcaaaatgaccttagtaaatacttggaggcagCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCCTTCAAATTTCAAGGTCAATGGCATATACCCAGTTCGGAAGTTATGGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctcgttcatttcggttttaggaaaattgaccatgttacatgcttggggacagCGGATGCTAAGAAGCAATATCCGGAGCTGTACACCAAATGGAGGGAGGACCCTGCAAATTTTCATGTCAATGGCATATACCCGATTAGGAAGTTGTGGGG
                          aattgac  putative branch site (score: 3)
                        aaaattga  TA-rich tract