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...ttgacatactatctcatataagaacaaagatatatccattgttgcttgcgcacctgagtgtgtatgcgtatcaaatctaaccacttgagttttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCAATTCATGCAAGTCCAGTATTCTCTGGCAGGGATATTCGAAGTGAAAAG
species | Zea mays |
transcript | GRMZM2G114337_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGAAAAATTCTTCATG GGACACTGTAGACCGATACACCATATATGTACATGCATCAAGAGATAGACCEST: gi|76929761|gb|DV172149.1|DV172149
genomic: GGGAAAAATTCTTCATGgtatggtttt ... tttctttcagGGACA-TGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACC
EST: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATG GGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCAEST: gi|148959781|gb|EE011019.2|EE011019
genomic: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATGgtatggtttt ... tttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCA
EST: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATG GGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAAATAGACCAEST: gi|101389979|gb|EB816921.1|EB816921
genomic: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATGgtatggtttt ... tttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCA
EST: GACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAAATTCTTCATG GGACATGAAGACCGATACCCCATATATGTGCATGCATCEST: gi|76284048|gb|DV023616.1|DV023616
genomic: GACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAA-TTCTTCATGgtatggtttt ... tttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATC
EST: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATG GGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCAEST: gi|89248001|gb|DY619787.1|DY619787
genomic: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATGgtatggtttt ... tttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCA
EST: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATG GGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCA
genomic: TGACGCCCAGTTCATTGCCATTTGAGAAACTGTGGGAAAAATTCTTCATGgtatggtttt ... tttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCA
ttgcgcacctgagtgtgtatgcgtatcaaatctaaccacttgagttttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCAATTCATGCAAGTCCAGTATTCTCTGGCAGGGATATTCGAAGTGAAAAG
atctaac putative branch site (score: 26)
ttttctttc putative PPT
tatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacatactatctcatataagaacaaagatatatccattgttgcttgcgcacctgagtgtgtatgcgtatcaaatctaaccacttgagttttctttcagGGACATGAAGACCGATACACCATATATGTGCATGCATCAAGAGATAGACCAATTCATGCAAGTCCAGTATTCTCTGGCAGGGATATTCGAAGTGAAAAG
- - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - -gcacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacca