1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcccttggagtgggtgccctgttcatgggcaccggctgcacgtgccctcgctcgagcctggtgatttatgtgttttaaagttttcttttctaaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTTGACGATTTTGACTTTGAGCAGAATGAAGCTACACCCATTAAGGATAAA
species | Zea mays |
transcript | GRMZM2G114172_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACTATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|211318594|gb|FL124207.1|FL124207
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|78106134|gb|DV524552.1|DV524552
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|71772417|gb|DR970350.1|DR970350
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|31405818|gb|CD484550.1|CD484550
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|149088593|gb|EE177708.2|EE177708
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|78090561|gb|DV518935.1|DV518935
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
cctcgctcgagcctggtgatttatgtgttttaaagttttcttttctaaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTTGACGATTTTGACTTTGAGCAGAATGAAGCTACACCCATTAAGGATAAA
ttctaaa putative branch site (score: 2)
ttttcttttct CT-rich tract
atttatgtgttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccttggagtgggtgccctgttcatgggcaccggctgcacgtgccctcgctcgagcctggtgatttatgtgttttaaagttttcttttctaaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTTGACGATTTTGACTTTGAGCAGAATGAAGCTACACCCATTAAGGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC