1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcctgtcttaattgaaaggcagggctcctgccattacatttaaaacaaactttccctgcaaattcgtctgtgacgatatgtctctggtgctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAA
species | Zea mays |
transcript | GRMZM2G113995_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTG GTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGACGTTTACTGTGTGGGEST: gi|211080130|gb|FL417797.1|FL417797
genomic: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTGgtaggttatc ... ctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGG
EST: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTG GTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGGEST: gi|211418920|gb|FL421658.1|FL421658
genomic: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTGgtaggttatc ... ctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGG
EST: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTG GTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGGEST: gi|76014240|gb|DT941410.1|DT941410
genomic: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTGgtaggttatc ... ctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGG
EST: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTG GTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGGEST: gi|211421603|gb|FL420626.1|FL420626
genomic: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTGgtaggttatc ... ctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGG
EST: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTG GTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGG
genomic: ATTGTACAAGCTGCATATCGGGGAGGTTTTGTCGACTGTTCCCACGATTGgtaggttatc ... ctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGG
acaaactttccctgcaaattcgtctgtgacgatatgtctctggtgctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAA
aaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctgtcttaattgaaaggcagggctcctgccattacatttaaaacaaactttccctgcaaattcgtctgtgacgatatgtctctggtgctatcactagGTTTCAACGTCGAGAAAGTTCAATACAAGAATGTGATGTTTACTGTGTGGGATGTTGGTGGCCAAGAAAAGTTGAGGCCCTTGTGGAGGCACTACTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG