1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catcatcatcaccgtatctaggctatgagaatgcagctagaaacgttttgtttatggtctaacacgaacgcaaattttttttgtgtgtgcttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGGATATGCAAGGGATCCCCTGGAACGTGATGCCGACTACAAGGGACAAGT
species | Zea mays |
transcript | GRMZM2G113726_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCT ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGEST: gi|211202621|gb|FL195841.1|FL195841
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: GCCACGCCGTTCGAATGGATGGCTCCGACGACGATGAGCTGGACCAACCT ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGEST: gi|60349121|gb|DN216094.1|DN216094
genomic: GCCACGCCGTTCGAATGGATGGCT-C--CGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAA-C- -C---T----CGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGEST: gi|71771227|gb|DR969164.1|DR969164
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
EST: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCT ACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
genomic: ACCGCCACGCCGTTCGAATGGATGGCTCCGACGATGAGCTGGACCAACCTgtaagcgcaa ... ttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAG
ttttgtttatggtctaacacgaacgcaaattttttttgtgtgtgcttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGGATATGCAAGGGATCCCCTGGAACGTGATGCCGACTACAAGGGACAAGT
gtctaac putative branch site (score: 63)
cttgttt putative PPT
aaattttttttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcatcatcaccgtatctaggctatgagaatgcagctagaaacgttttgtttatggtctaacacgaacgcaaattttttttgtgtgtgcttgtttgtagACGAGTAAAGCGACTGAGCACATCACGGCTATGGACGTGAGGAAGGGGAAGGATATGCAAGGGATCCCCTGGAACGTGATGCCGACTACAAGGGACAAGT
- - - catcacc
- - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcaaa