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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgccatagctacgcgtttcagattagttatactacctggtcgagttgagcatctatttaggccgagtaaacatctcatgtggcgatgctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG

Basic information

species Zea mays
transcript GRMZM2G113726_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113726_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g38880.6 (Oryza sativa), 3'ss of exon 1
gcatgccatagctacgcgtttcagattagttatactacctggtcgagttgagcatctatttaggccgagtaaacatctcatgtggcgatgctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG
||||| ||| | |||  ||| ||||| |  | |         |||  |||   || | | |    |  | ||   | | |||||  |||  || |||||| |||||  |||| ||| |||||   ||||||||| ||||||||| ||| ||| || |||||||||||||| || | ||||||||||
gcatggcattgttacatgtt-cagataaactgttgaggggtctcgcattgtatatttgtatctagcatggaagt-tttgatgtgttgatcttgatgcagGTATGCACACCTGTAGATAAAGGGGCACTCTACTATGAGTTTCAGTACAACACAAGATCGGTGAAACCGACAATTCTTCATTTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961405|gb|CN844114.1|CN844114
EST:     GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAG                         GAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
genomic: GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAGgcatgccata ... gctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
EST: gi|32795211|gb|CD947447.1|CD947447
EST:     GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAG                         GAATGCATGCCTGCAGAGAAAGACCAACTCTACTACGAGTTTCAGCACAGC
genomic: GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAGgcatgccata ... gctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
EST: gi|60349121|gb|DN216094.1|DN216094
EST:     GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAG                         GAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
genomic: GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAGgcatgccata ... gctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttgagcatctatttaggccgagtaaacatctcatgtggcgatgctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGCACGAGGTCGGTGAAACCGACCATCCGTCATTTCCAG
         atctattta  TA-rich tract