Sequence
atgc intronic sequence ATGC exonic sequence...tcggtctggtgcaagtggcaatcagatattaaaattctactattacgatttgatgttcacttagctttatcatattcatgttgatttgataaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113640_T06 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g06730.1 (Oryza sativa), 3'ss of exon 2
------tcggt--ctggtgcaagtggcaatcagatattaaaattctactattacgatttgatgttcacttagctttatcatattcatgttgatttgataaata-atcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAGT
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aaatagtagatggctggcatgtgcgctgttcagatgctaacattcaagt----tgttctggtgt--gctt---tttatctcgctcatagtgattccataaatccatcagGCGGAGAATAGTTTTGATGACATAACTGGCAAAGTGGTGGCTGACTTTGGCTGCGGGTGTGGCACCCTGTCTGTGGCAAGCTCTCTGCTGGATGCTGA--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211050250|gb|FL241531.1|FL241531EST: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG GCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGTCTAGCTG
genomic: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATGgttagtgctg ... aaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTG---A-CT-
EST:
gi|211047308|gb|FL241530.1|FL241530EST: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATG GCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGTCTAGCTG
genomic: TGGAGCAGTATGCGACGGGCCCTCACATCGCGTCGCGGATGCTCTACATGgttagtgctg ... aaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTG---A-CT-
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgatttgatgttcacttagctttatcatattcatgttgatttgataaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAGT
ttgatttgataaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcggtctggtgcaagtggcaatcagatattaaaattctactattacgatttgatgttcacttagctttatcatattcatgttgatttgataaataatcagGCAGAGAATAGTTTCAATGACATAACTGGCAAAGTGGTAGCTGACTTCGGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG