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...tgatatatatgtaaccataaattaatgggtatcaccagtttggtggctagtttccttatcatccatttataatgtgaattgctatggttgtgattcacagACATGTTCTTGGTATTGATATTGACCCGACTATCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG
species | Zea mays |
transcript | GRMZM2G113640_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|113778235|gb|DW895596.1|DW895596
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCCEST: gi|78110824|gb|DV529222.1|DV529222
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCC
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAAEST: gi|6227108|gb|AW155812.1|AW155812
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
EST: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGA ACATGTTCTTGGTATTGATATTGACCC-AC-AGTCACTTGAACTTGCTCAA
genomic: GGCTGTGGCTGTGGCACTCTGGCTGTGGCGAGTGCTTTACTGGATGCTGAgtgagtatgt ... tgattcacagACATGTTCTTGGTATTGATATTGACCCGACTA-TCACTTGAACTTGCTCAA
gctagtttccttatcatccatttataatgtgaattgctatggttgtgattcacagACATGTTCTTGGTATTGATATTGACCCGACTATCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG
atttataatgtgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatatatgtaaccataaattaatgggtatcaccagtttggtggctagtttccttatcatccatttataatgtgaattgctatggttgtgattcacagACATGTTCTTGGTATTGATATTGACCCGACTATCACTTGAACTTGCTCAAGAAAATGCTGCTGATCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT