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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcaagatggatactttaatttggtactgtgctagaattgaattattttgtggacggaggagtaccttttcttgtggtactgatcattgggttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTGGTTGATATTCAAAGCATTCTATGGACTTGGGGCATTGATATTTGGCAAT

Basic information

species Zea mays
transcript GRMZM2G113476_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113476_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g38850.1 (Oryza sativa), 3'ss of exon 2
ctcaagatggatactttaatttggtactgtgctagaattgaatt-attttgtggacggaggagtaccttttcttgtggtactgat--cattgggttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTGGTTGATATTCAAAGCATTCTATGGACTTGGGGCATTGATATTTGGCAAT
                       ||   || ||||  ||   || || |||   |     ||||   |  |||| |||| || ||     || ||| |  ||||||||| ||||| ||||| |||||||||||  |||| |||||||| ||||||||| |||||||||| |||||||| || | ||| || || | |||||||
-----------------------gtgtggttctagttttccttttatattggtcaaatttgagt-tttcatcttttggtgctaattttgctgtgttaatacagAGCATTAGTTGCTAGAGCTTTGATAGAGAACCCCCAACTGATAAATTGGTGGTTGGTATTCAAAGCGTTCTATGGGCTCGTGGCGTTAATCTGTGGCAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281546|gb|DV021114.1|DV021114
EST:     TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCAT                         AGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
genomic: TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCATgtgagtttct ... gttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
EST: gi|149081784|gb|EE170939.2|EE170939
EST:     TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCAT                         AGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
genomic: TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCATgtgagtttct ... gttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
EST: gi|71445925|gb|DR826975.1|DR826975
EST:     TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCAT                         AGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
genomic: TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCATgtgagtttct ... gttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
EST: gi|89250617|gb|DY622403.1|DY622403
EST:     TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCAT                         AGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
genomic: TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCATgtgagtttct ... gttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
EST: gi|101389442|gb|EB816675.1|EB816675
EST:     TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCAT                         AGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
genomic: TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCATgtgagtttct ... gttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
EST: gi|148973603|gb|EE024711.2|EE024711
EST:     TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCAT                         AGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
genomic: TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCATgtgagtttct ... gttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
EST: gi|148991565|gb|EE033091.2|EE033091
EST:     TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCAT                         AGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG
genomic: TGGAGATTTTTAAGGCCACATACAATCCGAGGAACTGCTTTAGGATCCATgtgagtttct ... gttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtggacggaggagtaccttttcttgtggtactgatcattgggttgacgcagAGCATTGGTTGCGAGAGCCTTGATAGAGAATTCCCATCTGATAAACTGGTGGTTGATATTCAAAGCATTCTATGGACTTGGGGCATTGATATTTGGCAAT
                     ttttctt  TA-rich tract