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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctgcagataagctcctcgaactttatccatgaaatggtatgttttctgcttcacgtagtactaaggccaatgttcatgcagGAATGTGTGATGACAGCACTTGCAGAGAAGACTGTCGTCCTTGTGACCCACCAGGTTGAATTTCTGACTGAAACCGATAGGATTCTG

Basic information

species Zea mays
transcript GRMZM2G113203_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113203_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g36650.1 (Oryza sativa), 3'ss of exon 3
gtatgctgcagataagctcctcgaactttatccatgaa-atggtatgttttctgcttcacgtagtactaag-gccaatgttcatgcagGAATGTGTGATGACAGCACTTGCAGAGAAGACTGTCGTCCTTGTGACCCACCAGGTTGAATTTCTGACTGAAACCGATAGGATTCTG
               |||||| || ||  ||||||| |     |   |  |       | ||  || | || | |||||||| ||| ||| ||||| |||||||||||| ||||||||||||| || |||||||| ||||||||||||||||| || || || ||| ||||||||
-------------gtgctccttgacctgcatccatggatgcactccctgatgaaaaaaaagttctaatcagtggcaatgttcttgctggattgtgtaatgacagCACTTTCAGAGAAGACTGTAGTTCTTGTGACTCACCAGGTTGAATTTCTCACCGAGACTGATCGGATTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgaaatggtatgttttctgcttcacgtagtactaaggccaatgttcatgcagGAATGTGTGATGACAGCACTTGCAGAGAAGACTGTCGTCCTTGTGACCCACCAGGTTGAATTTCTGACTGAAACCGATAGGATTCTG
           tatgtttt  TA-rich tract