1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtgtcttttatgatctcctatcatcctatgattcttagtctgttgccgtcagtgtttggaagccttatttctgatcaaataagtgtttccttattttgtactgtcagGCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTGAGAGACCAACTAAATAGTGGAATTGTTCCAGATGGCATTGATGTCCACT
species | Zea mays |
transcript | GRMZM2G113073_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATCCTTTTGATGATGCAGAGACGCCTTTATGAACAGGGTGGTCTTCAG GCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTGEST: gi|5650020|gb|AI920380.1|AI920380
genomic: CCATCCTTTTGATGATGCAGAGACGCCTTTATGAACAGGGTGGTCTTCAGgtgtgtcttt ... gtactgtcagGCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTG
EST: CCATCCTTTTGATGATGCAGAGACGCCTTTATGAACAGGGTGGTCTTCAG GCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTGEST: gi|60355630|gb|DN222603.1|DN222603
genomic: CCATCCTTTTGATGATGCAGAGACGCCTTTATGAACAGGGTGGTCTTCAGgtgtgtcttt ... gtactgtcagGCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTG
EST: CCATCCTTTTGATGATGCAGAGACGCCTTTATGAACAGGGTGGTCTTCAG GCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTG
genomic: CCATCCTTTTGATGATGCAGAGACGCCTTTATGAACAGGGTGGTCTTCAGgtgtgtcttt ... gtactgtcagGCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTG
tgtttggaagccttatttctgatcaaataagtgtttccttattttgtactgtcagGCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTGAGAGACCAACTAAATAGTGGAATTGTTCCAGATGGCATTGATGTCCACT
ttctgat putative branch site (score: 114)
tttccttattttgt putative PPT
ttattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtcttttatgatctcctatcatcctatgattcttagtctgttgccgtcagtgtttggaagccttatttctgatcaaataagtgtttccttattttgtactgtcagGCAGAAGGTATCTTCCGTATAAATGCAGAAAATAGCCAGGAAGAGTTTGTGAGAGACCAACTAAATAGTGGAATTGTTCCAGATGGCATTGATGTCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG