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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgccatgccactgccaccccgatcacgtacaataccatctgcagttgaggttggaccgttggagttcaacgccattagcccattatcgtccctgtctgtgcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGGTCACAGTGGCGTCGGTGGGAGACTCGCGCTGCATCCTGGACACGCAGGG

Basic information

species Zea mays
transcript GRMZM2G113016_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113016_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g49040.1 (Oryza sativa), 3'ss of exon 2
gtgagtgccatgccactgccaccccgatcacgtacaataccatctgcagttgaggttgg-accgttggagttcaacgccattagcccattatcgtccctgtctgtgcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGGTCACAGTGGCGTCGGTGGGAGACTCGCGCTGCATCCTGGACACGCAGGG
                         || | || ||   | | | |||  |   |  ||   ||  | ||| ||  ||| | ||   ||| |||  |            |   ||||||||||||| || ||||| || || ||||||||| ||||||| ||||||||||| |||||||| || || |||||||| ||||||||||||||||||||
-----------------------gtgagcccggacgg-atcgtttgc--tcacgactgacgcctcttgagatccccgcaactaatacatcatctac------------tggtcagGGGAGGTGTCGGGGACCACCGCAACGCTGGTGGTCGTCGATGGATTCACGGTCACGGTGGCGTCAGTCGGGGACTCGCGGTGCATCCTGGACACGCAGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71322508|gb|DR797928.1|DR797928
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|149082616|gb|EE171816.2|EE171816
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|89251895|gb|DY623681.1|DY623681
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|148943771|gb|EC888842.2|EC888842
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|71425430|gb|DR806665.1|DR806665
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|50336767|gb|CO531893.1|CO531893
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|148999591|gb|EE036571.2|EE036571
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|148933045|gb|EE285941.2|EE285941
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|211486018|gb|FK978327.1|FK978327
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGGAAC-ACGGCGACACTGGTGGTCATCGATGGGGTCACG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGG-AACCACGGCGACACTGGTGGTCATCGATGGGTTCACG
EST: gi|211480258|gb|FK978312.1|FK978312
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAA
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAA
EST: gi|211480251|gb|FK978305.1|FK978305
EST:     CGCTCTCGTCGCGGGCTTTGTCAGGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGGTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|148932896|gb|EE285678.2|EE285678
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|211483145|gb|FK978322.1|FK978322
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAAGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
EST: gi|93284247|gb|EB676511.1|EB676511
EST:     CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGG                         GGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG
genomic: CGCTCTCGTCGCCGGCTTTGTCAAGGCCGACATTGATTTCCAGCGCAAGGgtgagtgcca ... gcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgttggagttcaacgccattagcccattatcgtccctgtctgtgcgtatccagGGGAGGTGTCAGGAACCACGGCGACACTGGTGGTCATCGATGGGTTCACGGTCACAGTGGCGTCGGTGGGAGACTCGCGCTGCATCCTGGACACGCAGGG
                           attat  TA-rich tract