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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC

Basic information

species Zea mays
transcript GRMZM2G112337_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g40840.1 (Oryza sativa), 3'ss of exon 2
---------------------------------------------------------------------aaccattctaacccattatctagatta-agagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
                                                                     | ||||| ||   |  |||||| |  | ||  |      | |        |    ||    | ||||||||   |||||||| ||    |||| ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||
gtgcctttgtctcttccaatgttcttttgtatgtgtgctttataatgactggaactaaggatagcagcaagccattttagttccctatctacaccatagcatctgtgcaacgaaaagttatatgagtagtgcataggattgg-acaagtgactgactagtgtcatttcagTTGATATGGGATGAGGTTGGTGAAAGCGATGAAGACCGTGACAAGATGTTACTTCAGCTAGAACAAGAATGCTTGGATGTTTACAGGAGAAAGGTTGATC

upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G02180.4 (Glycine max), 3'ss of exon 2
--aaccattctaacccattatctagattaag--agttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
  ||| |   | |  ||   | |    |  |  | |||||||   | | ||  |   || | | | |||  | | |   |  |  |   |||  | | |   ||   ||||||||||||||||| || || || ||  | || ||||||||| | |||||| ||||||| |||||||| ||||| || | |||||||||||| |
gtaactaacttcattcagcttttcatctgtgtcacttaagatgcgaatgctctacagaataatgggata--aattaattacattttctttattcgctgt---agGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC

upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA18G10090.1 (Glycine max), 3'ss of exon 1
aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
                || ||  |  | |  ||      |  || || ||     |  | || ||  |  ||   | |   |   |||   || || |||   ||||||||||||||||| || || ||||| || |  ||||||||| | |||||| ||||||||||||| ||  |||| || |  ||||||       
---------------gtaactctacaatgcttttcatctgtgttactgcagatgtgcatggtctacaaaacagtgagggtgtctttat---ttgttgcagGGAATATGGGATGAGGTTGGTGAGAGCGATGAGGAGCAAGACAAGATGCTCCTTCAGATAGAGCAAGAGTGTTTGAATGTGTACAAAAGAAAG-------

upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA14G02200.1 (Glycine max), 3'ss of exon 1
--aaccattctaacccattatctagattaag--agttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
  ||| |   | |  ||   | |    |  |  | | |||||   | | ||  |   || | | | |||  ||| |    |    || || | | |   |  ||   ||||||||||||||||| || || || ||  | || ||||||||| | |||||| ||||||| |||||||| ||||| || | |||||||||||| |
gtaactaacttcattcagcttttcatctgtgtcactcaagatgcgaatgctctacagaataatgggataa-attaatttcat---tttctttat-tcgctgtagGAAATATGGGATGAGGTTGGTGAGAGCGACGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC

upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G46450.3 (Glycine max), 3'ss of exon 2
------aaccattctaacccatt-atctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
      ||| |   | | | ||| ||||   ||   | |||||||   | | ||  |   || | | | ||  |||    |||  | ||   |||    | |   ||   ||||||||||||||||| || || |||||  | || ||||||||| | |||||| |||| || |||||||| ||||| || | |||||||||||| |
gtaactaactacattcagctattcatct---ttgtcacttaagatgcgaatgctctacagaataatgggattagataattaca--ttatctttatacactgt---agGAAATATGGGATGAGGTTGGTGAGAGCGATGAGCAACGAGACAAGATGCTTCTTCAGTTAGAACAGGAGTGCTTGGATGTGTACAAGAGAAAGGTTGAGC

upper sequence: GRMZM2G112337_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 1
aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattg-ctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
   |||| |   |  |    || ||||    |  |  |||   ||  | |   | ||  ||   |        | | |   |   | |||  ||| | ||||  || |||||||||||||| ||||| ||||| || ||||| || ||| | |||||| |||||||||||||||| || ||||||| ||| ||||||||||
-gtcattgtttactttgtgatatattagtgttataagtagaccttgcatactgaggaacagggcaaatacgctaaatgctgtaaaccatggtttaatgcagCAAATCTGGGATGAGGTTGGTGAAAGCGATGAGGAACGTGATAAAATGCTCCTTCAGTTAGAGCAAGAGTGCTTGGACGTTTATAAGAGGAAGGTTGATC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771990|gb|DR969927.1|DR969927
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148947544|gb|EC893017.2|EC893017
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|149100805|gb|EE186899.2|EE186899
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|88756751|gb|DY540892.1|DY540892
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|101402372|gb|EB822761.1|EB822761
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGGGATGAAGATCGTGACAAAGATGTT
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAA-GATGTT
EST: gi|149070598|gb|EE159003.2|EE159003
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|211163234|gb|FL071799.1|FL071799
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|71773222|gb|DR971131.1|DR971131
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|71448830|gb|DR829880.1|DR829880
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|211382995|gb|FL318290.1|FL318290
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|76014764|gb|DT941934.1|DT941934
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|149098530|gb|EE184516.2|EE184516
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|89761743|gb|DY689636.1|DY689636
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|89763679|gb|DY690773.1|DY690773
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|76289491|gb|DV029059.1|DV029059
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148930867|gb|EC873288.2|EC873288
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|149078382|gb|EE167157.2|EE167157
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148985938|gb|EE029851.2|EE029851
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAAATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148975390|gb|EE025689.2|EE025689
EST:     CCATTGTTAGGTGAAACGACATGGGGGTCTTTGGCTGGCAGCAACTTCAG                         CTGATATGGGATGAAGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: CCATTGTTAGGTGAAACGACATGTGGGTCTTT-GCT-GCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148959723|gb|EC905625.2|EC905625
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|71435945|gb|DR816995.1|DR816995
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148999825|gb|EE036849.2|EE036849
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|149096273|gb|EE181983.2|EE181983
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148964767|gb|EC906024.2|EC906024
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|149081898|gb|EE171059.2|EE171059
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148995698|gb|EE034921.2|EE034921
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|149015047|gb|EE044793.2|EE044793
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|71324224|gb|DR798815.1|DR798815
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|71306091|gb|DR789195.1|DR789195
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|71438424|gb|DR819474.1|DR819474
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|149088741|gb|EE177865.2|EE177865
EST:     ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: ATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
EST: gi|148978442|gb|EE026170.2|EE026170
EST:     TCCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG                         CTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA
genomic: TCC-ATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAGgtgctctgct ... gttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC
                                              ttatttc  CT-rich tract
                                            tgttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaccattctaacccattatctagattaagagttaagatagcatttctacaagaaagagtagtataggattcacacaagtgattgctatgtgttatttcagCTGATATGGGATGAGGTTGGCGAAAGTGATGAAGATCGTGACAAGATGTTACTTCAGCTAGAGCAAGAGTGCTTAGATGTTTATAGGAGAAAGGTTGATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA