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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA

Basic information

species Zea mays
transcript GRMZM2G112240_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g57450.2 (Oryza sativa), 3'ss of exon 2
gt-tgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
||      || ||  ||  |  ||||||  |||||    |      ||| ||||| ||  ||   | | ||||  | |||| |||||| ||||||||||||||||||||| |||||||| || |||| ||| ||||| ||||||||||| || |||||||| |||||||||||||| || || |||||||||||||
gtgccccatgctcacaattacctgacctttttatttttct------taccaagtgaattgatttatcagttat--tcttgccttgttggaattcagGTTGTCGAAGATGGGTACGAGTTCTTTGCTAACCGCCAACTTGTAACAATATTCTCGGCCCCTAATTACTGTGGAGAATTTGATAATGCTGGTGCCATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G43800.1 (Glycine max), 3'ss of exon 2
-----------gttgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
             ||   |  | || |    | |   || |   |  |  || |||||     | |   |||| |||| || |  ||| || || ||  |   |||||||| ||||||||||| ||||| || ||||  || ||||| ||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
tttgtaccgtacatgcctttatgtttagatcgggggatagtaggtgtca-atcaactatgctat-tgaaaataatttattttt--tttggccttctttta--ccagGTTGTGGAAGATGGATATGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAATTTGACAATGCTGGTGCTATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA03G41200.1 (Glycine max), 3'ss of exon 2
-gttgt-tgtgttcttaa----agatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
   |||   ||   |||     ||||  |       ||   |   || |||||     | |   | ||  ||  || |  ||||      ||      |||||||| ||||||||||||||||| || ||||  || ||||| ||||||||||||||||| ||||| || ||||| || || ||||| |||||||| ||||
tactgtacatgcctttatgtttagatcgggggatagtaggcctcgatcaactatgctat-tgaaagtaaattgttttttgttttcggcctttttttaccagGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAACTTGTAACAATATTTTCAGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G00960.1 (Glycine max), 3'ss of exon 2
-gttgttgtgt-tcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
  ||  | ||  | ||     |||||  |  | | ||    ||     | | |||  |   ||||  ||    | ||| ||  || ||    |  ||||||| ||||||||||| |||||||| || |   | ||||| || || || ||||| || |||||||||||||||||||| ||||| ||||| || ||||
gtttcatatgcattttttttttgtgaagt-ttgagtatgcaattgtagaaagagttcaagtatagcataaactt-cttgtgtgtt-ttcttttgtagGTTGTTGAAGATGGATATGAGTTTTTTGCCAATAGACAACTTGTGACTATCTTTTCTGCACCTAACTACTGTGGAGAATTTGACAATGCTGGAGCAATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G36510.1 (Glycine max), 3'ss of exon 2
---------gttgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaat---agtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
          ||  ||  ||  |  | || |||   |  || || ||   || |  |   |    | |||   | ||   |||   ||||| | | |||||   ||||| || |||||||| || ||||| || |||| ||| || || ||||||||||||||||| ||||| || |||||||| || ||||| ||||| || ||||
attctttacattcctgcatttatttacat-tgaagga--tagtatctatcaatccgctctgctattaaatttaaattggattaatgttttg-acttttgaa---cagGTGGTGGAAGATGGGTATGAGTTCTTTGCTAACCGGCAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGAGAGTTTGACAATGCTGGCGCTATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G30970.1 (Glycine max), 3'ss of exon 2
gttgttgtgttcttaaagatgtgac-ctacttattaccttataa-actacaaagtgtatcaatagtttacttatgcttttgcattgttgaaatt----cagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
|  | |    |  |     |   |  | |||||||| ||||| |  || ||   | || |  |  |  | |||   |     | ||||||  ||    ||||| || || ||||| |||||||| || |||| ||| || || ||||||||||||||||| ||||| || |||||||| || ||||| ||||| || ||||
gaggctaaacttctccctttcaaatgccacttattagcttatgatgcttcattcttta-cgttcctgcatttaaattggattaatgttgagttttgaccagGTGGTGGAGGATGGGTACGAGTTCTTTGCTAACCGGCAGCTTGTAACAATATTTTCAGCACCTAATTATTGTGGAGAGTTTGACAATGCTGGCGCTATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA02G00850.1 (Glycine max), 3'ss of exon 2
--gttgt-tgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
   || | ||  ||  ||   |  |    |    | |   |   | | | ||| || | |  |||   | ||| ||  ||| | ||       |  ||||||| ||||||||||| || |||||  | |   | ||||| || || || ||||| || |||||||||||||||||||| ||||| ||||| || ||||
gttttatatgcatttctatgaagtttgagtgtgcaattgttggaagagttcaa-gtat-tgcataacctgcttgtgtgttttcttt-------tgtagGTTGTTGAAGATGGATATGAATTTTTTTCCAATAGACAACTTGTGACTATCTTTTCTGCACCTAACTACTGTGGAGAATTTGACAATGCTGGAGCAATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv05s0049g00890.t01 (Vitis vinifera), 3'ss of exon 2
gttgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttt-tgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
|||   |   | ||  || | |     | || ||   |  | | ||  |||          | ||| ||  | ||   |   |  |||   | |||||||| |||||||||||||||||||| ||||   | ||||| ||||| ||||||||||| ||||| |||||||| || || || || || ||||||||||
gtttcagctctgttttagct-ttttgcattttttttttggtcacctttaaacctctcaggcatttttctcttactacatatttccttgttgtgcagGTTGTGGAAGATGGATACGAGTTTTTTGCTAATAGACAACTTGTAACCATATTTTCAGCACCTAATTACTGTGGTGAGTTTGATAATGCGGGTGCCATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ20637 (Selaginella moellendorffii), 3'ss of exon 2
gttgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagttt-acttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
                              ||| |   |    | | |    | | ||  |  ||| |        | |||| |    | |  ||||| || ||||| ||||||||||||||||| | | | ||||| || || |||||||| || || ||||| ||||| || ||||||||  | || || ||||
-----------------------------gtatgatgctcgtgagttctttctttctcgttgctttgagccccatgtctgcaataacaataa-cagGTGGTGGAAGACGGATACGAGTTTTTCGCCAACAGACAACTTGTGACGATATTTTCGGCACCCAACTATTGTGGGGAGTTCGACAATTCAGGCGCTATGA

upper sequence: GRMZM2G112240_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ32796 (Selaginella moellendorffii), 3'ss of exon 2
gttgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagttt-acttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
                              ||| |   |    | | |    | |||   |  ||| |        | |||| |    | |  ||||| || ||||| ||||||||||||||||| | | | ||||| || || |||||||| || || ||||| ||||| || ||||||||  | || || ||||
-----------------------------gtatgatgctcgtgagttctttctttattgttgctttgagccccatgtctgcaataacaataa-cagGTGGTGGAAGACGGATACGAGTTTTTCGCCAACAGACAACTTGTGACGATATTTTCGGCACCCAACTATTGTGGGGAGTTCGACAATTCAGGCGCTATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14244543|gb|BG840654.2|BG840654
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|213170798|gb|FM182282.1|FM182282
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|32930825|gb|CF035637.1|CF035637
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|60337978|gb|DN204951.1|DN204951
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|24767959|gb|CA403092.1|CA403092
EST:     CTGAATTTCTTGAGAAGCATGATTTGGCCCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|9254755|gb|BE345223.1|BE345223
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|113701331|gb|EE678835.1|EE678835
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|32941551|gb|CF046370.1|CF046370
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|32937834|gb|CF042653.1|CF042653
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|16925853|gb|BM078921.1|BM078921
EST:     GAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: GAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|60352633|gb|DN219606.1|DN219606
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|78024437|gb|DV492824.1|DV492824
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|28984402|gb|BQ539077.2|BQ539077
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|60358332|gb|DN225305.1|DN225305
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|28911225|gb|BM333651.2|BM333651
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|78085667|gb|DV514060.1|DV514060
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|13558333|gb|BG549689.1|BG549689
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|18662200|gb|BM501797.1|BM501797
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|4966758|gb|AI691614.1|AI691614
EST:     TTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|67018572|gb|CO447321.1|CO447321
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|71326724|gb|DR800024.1|DR800024
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|24766340|gb|CA401494.1|CA401494
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|60338284|gb|DN205257.1|DN205257
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|16917634|gb|BM073377.1|BM073377
EST:     ATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: ATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|9794594|gb|BE552902.1|BE552902
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|16379656|gb|BI993080.1|BI993080
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|32867249|gb|CF006931.1|CF006931
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|60337898|gb|DN204871.1|DN204871
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|33098441|gb|CF058401.1|CF058401
EST:     GATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: GATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|31360342|gb|CD444699.1|CD444699
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|18655205|gb|BM500010.1|BM500010
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|32932008|gb|CF036820.1|CF036820
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|78124411|gb|DV542795.1|DV542795
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|33094693|gb|CF054687.1|CF054687
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|14206794|gb|BG840472.1|BG840472
EST:     CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|4967006|gb|AI692004.1|AI692004
EST:     TTGAATTTCTTGAGAAGCATGATTTGGCCCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATCCGAGTTTTTCGCTAGCCGTCAACTCGTACCAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
EST: gi|5468602|gb|AI834393.1|AI834393
EST:     CTGAATTTCTTGANAAGCATGATTTGGACCTTATCTGCCGAGCACATCAG                         GTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA
genomic: CTGAATTTCTTGAGAAGCATGATTTGGACCTTATCTGCCGAGCACATCAGgttgttgtgt ... tgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA
                  aatagtttacttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgttgtgttcttaaagatgtgacctacttattaccttataaactacaaagtgtatcaatagtttacttatgcttttgcattgttgaaattcagGTTGTCGAAGATGGATACGAGTTTTTCGCTAGCCGTCAACTCGTAACAATATTTTCAGCCCCTAACTACTGTGGAGAATTCGACAACGCTGGTGCCATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA