1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtaaactcctgtcttgaatgcttactgctggtggctttttttgtggtattggtctaacatattttattaccttactctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCG
species | Zea mays |
transcript | GRMZM2G112149_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|32838735|gb|CD978416.1|CD978416
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtaaac ... ctctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTCEST: gi|211335859|gb|FL127562.1|FL127562
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtaaac ... ctctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTCEST: gi|14701267|gb|BI233685.1|BI233685
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtaaac ... ctctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTCEST: gi|211325027|gb|FL127486.1|FL127486
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtaaac ... ctctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTC
EST: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTA CCACTTTATTGTCCCTGAACTTGGCCCAAGCACCAAGTTCACATACGCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGATACAAACTAgtaagtaaac ... ctctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTC
ggtggctttttttgtggtattggtctaacatattttattaccttactctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCG
ttaccttactcttt CT-rich tract
tctaacatattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaactcctgtcttgaatgcttactgctggtggctttttttgtggtattggtctaacatattttattaccttactctttgcagCCACTTTATTGTCCCTGAACTTGGTCCAAGCACCAAGTTCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG