1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgctacatcctacagtgtcctgcaggctgcaggcggcggcagcggtgccaatccggcgaggaaggttcgggattttgtattgacttgactgattgatccggttccgtttggtttttggtggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAGAAGTACGGGCTCACCATGCCGCTCACGCAGGACGAGTGGGTTAACTTC
species | Zea mays |
transcript | GRMZM2G112072_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|76285399|gb|DV024967.1|DV024967
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|26558570|gb|CA830805.1|CA830805
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|94479774|gb|EB708732.1|EB708732
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|28909485|gb|CB331838.1|CB331838
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|32790909|gb|CD943145.1|CD943145
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCGTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|87155656|gb|DY400445.1|DY400445
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|211074049|gb|FL055815.1|FL055815
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|76937083|gb|DV175029.1|DV175029
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|32800575|gb|CD952811.1|CD952811
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCGTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAEST: gi|211074048|gb|FL055814.1|FL055814
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
EST: AGTTCTTCGGCTACGCGGCGAACAG CATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
genomic: AGTTCTTCGGCTACGCGGCGAACAGgtacgctaca ... tggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAA
tttgtattgacttgactgattgatccggttccgtttggtttttggtggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAGAAGTACGGGCTCACCATGCCGCTCACGCAGGACGAGTGGGTTAACTTC
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctacatcctacagtgtcctgcaggctgcaggcggcggcagcggtgccaatccggcgaggaaggttcgggattttgtattgacttgactgattgatccggttccgtttggtttttggtggactgcagCATCCTCTACAACCGCGCCGTGTACCCGGGGGAGAGCTTCGCCAAGGTGAAGAAGTACGGGCTCACCATGCCGCTCACGCAGGACGAGTGGGTTAACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT