1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaaactaaactaaacaagctacatatagctcactcattcttccctgctcctccagattcagttctgaaggcacacctgtatctaactaagaatggttctgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
species | Zea mays |
transcript | GRMZM2G111954_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|149077171|gb|EE165834.2|EE165834
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|148931921|gb|EC875135.2|EC875135
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|148935240|gb|EC879277.2|EC879277
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|149063769|gb|EE157636.2|EE157636
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|67034494|gb|CO463044.1|CO463044
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: CGATAACGGTATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|149013468|gb|EE042982.2|EE042982
genomic: CGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|148972626|gb|EE023587.2|EE023587
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|148982464|gb|EE028329.2|EE028329
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|148936271|gb|EC880349.2|EC880349
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|149111659|gb|EE190803.2|EE190803
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
agattcagttctgaaggcacacctgtatctaactaagaatggttctgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
atctaac putative branch site (score: 2)
ttctgtcct putative PPT
tatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaactaaactaaacaagctacatatagctcactcattcttccctgctcctccagattcagttctgaaggcacacctgtatctaactaagaatggttctgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG