1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaaactaaactaaacaagctacatatagctcactcattcttccctgctcctccagattcagttctgaaggcacacctgtatctaactaagaatggttctgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
species | Zea mays |
transcript | GRMZM2G111954_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGGEST: gi|148956324|gb|EC902127.2|EC902127
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
EST: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCA CTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
genomic: TCGATAACGGGATGACCTTCTTCGATACTGCAGAAGTTTACGGTACAGCAgtaagaaact ... tgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
agattcagttctgaaggcacacctgtatctaactaagaatggttctgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
atctaac putative branch site (score: 571)
ttctgtcct putative PPT
tatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaactaaactaaacaagctacatatagctcactcattcttccctgctcctccagattcagttctgaaggcacacctgtatctaactaagaatggttctgtcctacagCTGATGGGAGCAGTCAATTCTGAAACTTTACTAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG