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gtgagtttaccaagtccctggaaaggaagagtgcaataacttgttttgctttctttactgtcttagttctgatgcacaaaatccatcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTGAGGAGAAGCCAAAGAAAGAGCCTGATGGCATGATGAAGAAGAAGAGAA
species | Zea mays |
transcript | GRMZM2G111138_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTEST: gi|211098820|gb|FL225942.1|FL225942
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCA-TAGTAGEST: gi|9731238|gb|BE509990.1|BE509990
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAG
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTEST: gi|211098821|gb|FL225943.1|FL225943
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTEST: gi|71426094|gb|DR807144.1|DR807144
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTEST: gi|60399740|gb|DN232550.1|DN232550
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTEST: gi|78024478|gb|DV492865.1|DV492865
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTEST: gi|211098823|gb|FL225945.1|FL225945
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTEST: gi|211098819|gb|FL225941.1|FL225941
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTEST: gi|211101290|gb|FL225947.1|FL225947
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
cttgttttgctttctttactgtcttagttctgatgcacaaaatccatcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTGAGGAGAAGCCAAAGAAAGAGCCTGATGGCATGATGAAGAAGAAGAGAA
ttctgat putative branch site (score: 3)
tttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttaccaagtccctggaaaggaagagtgcaataacttgttttgctttctttactgtcttagttctgatgcacaaaatccatcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTTGAGGAGAAGCCAAAGAAAGAGCCTGATGGCATGATGAAGAAGAAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA