1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtttctgcatcttttattgcaattgaaatattattagatctggttagtcaatgcctttccttttctgcatgattaggatattttatgtgactgattaatgactattctaagaaatgttattagcaagagttactgatctcaaaattgttctaagtatgatcatatccttgcagGACAGAACTCTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATCCGATTTATCCGTGCTGATTCTCAG
species | Zea mays |
transcript | GRMZM2G110328_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCTGAGAAGATGGTGCTGAA GACAGAACTCTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATEST: gi|31356515|gb|CD440872.1|CD440872
genomic: TGAAGCTGAGAAGATGGTGCTGAAgtaagtttct ... atccttgcagGACAGAACTCTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCAT
EST: GAAGGTTTCTTGAAGCTGAGAAGATGGTGCTGAA GACAGAACTCTGCCGCTTCAGCGGCCAGAACATTTATCCTGGGAAAGGCAT
genomic: GAAGGTTTCTTGAAGCTGAGAAGATGGTGCTGAAgtaagtttct ... atccttgcagGACAGAACTCTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCAT
attagcaagagttactgatctcaaaattgttctaagtatgatcatatccttgcagGACAGAACTCTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATCCGATTTATCCGTGCTGATTCTCAG
tactgat putative branch site (score: 252)
tatcctt putative PPT
aaaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctgcatcttttattgcaattgaaatattattagatctggttagtcaatgcctttccttttctgcatgattaggatattttatgtgactgattaatgactattctaagaaatgttattagcaagagttactgatctcaaaattgttctaagtatgatcatatccttgcagGACAGAACTCTGCCGCTTCAGCGGCCAGAAGATTTATCCTGGGAAAGGCATCCGATTTATCCGTGCTGATTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT