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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatgagcttacgcattgctttttatatgcctaaattgttgtaaagctaaacgcctgctgtgcttaatttggctttaccatgtgtccatgttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG

Basic information

species Zea mays
transcript GRMZM2G110233_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g22880.1 (Oryza sativa), 3'ss of exon 2
tgatgagcttacgcattgctttttatatgcctaaattgttgtaaagctaaacgcctgctgtgcttaatttggctttaccatgtgtccatg-ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
  | ||     |   |   | |   || |   ||| | | ||||||  |||       |   |    ||||  | | |    | |   || || | | ||| | || |||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||| || |
caaagaaaaatcttgtatgtgtgcttaagttcaaaatctcgtaaagaaaaaatgtatgtacacccg-tttgcttattctggttttgtgtgatttactttagAAATCGGACTTGGAGAAGGCGCAGCTTGGCCTGGGTCATAGCTACAGCAGGGCGAAGGTGAAGTTCAATGTGAACCGCGTTGACAACATGGTGATTCAGG

upper sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G03150.1 (Glycine max), 3'ss of exon 2
--tgatgagcttacgcattgctttttatatgcctaaattgttgtaaagctaaacgcctgctgtgct--taatttggctttaccatgtgtccatgttgattgt----agGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
  |  ||      |      | |||| | |  ||  ||    | | | ||  |       | |     ||||||   | |    | ||| |   |||||| |    ||  |   || ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| || ||||| || |||||||| || ||||
gttagtgtttcctcatgcctccttttgtgtttctgtatc-caggacacctgtatcttatttatatcactaatttatatattgtttttgtgctgcttgatttttcacagTCTGGAGATTTGGAAAAGGCACAACTTGGTCTGGGACATAGTTACAGCAGGGCAAAGGTGAAGTTTAATGTTAACCGTGTAGACAACATGGTTATTCAAG

upper sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G11560.1 (Glycine max), 3'ss of exon 2
---------tgatgagcttacgcattgctttttatatgcctaaat----tgttgtaaagctaaacgcctgctgtgcttaatttggctttaccatgtgtccatgttgattgta----gGATTCTG---ACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
         |  |       ||  |   |||  | | ||  ||      ||||||| ||  | |    |     | ||| |||   |  |  || | |     ||||||| |    | | || |   | ||||| ||||| |||||||| ||||||||||| |||||||| || |||||||| |||||||| || |||||||| |||||||| || ||||
gttagcatttactcctgcctcgtgtgtttttgcagaagcagaatcaccgtgttgtataggaatatatttcgcaag-ttattttatttaaattattttttttccttgattgaattctgtagTCCGGGGATTTGGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTGAAATTCAATGTTAACCGTGTTGACAACATGGTCATTCAAG

upper sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA17G13770.1 (Glycine max), 3'ss of exon 2
--tgatgagcttacgcattgctttttatatgcctaaattgttgtaaagctaaacgcc--tgctgtgcttaatttggctttac--catgtgtccatgttgattgtagGATTCTG---ACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
  |  ||      |      |||||| | |  ||   | |  | | | ||     |   |  | |   ||||||   | ||     | | | |   |||||| |   | ||||   | || || ||||| |||||||| ||||||||||| |||||||| || ||||||||||| ||||| || |||||||| |||||||| || ||||
gttagtgtttcctcatgcctctttttgtgtttctgtgt-gcaggataactgtgtcctatttttatcactaatttatatatatattttttatgctgcttgattttcacagTCTGGAGATTTAGAAAAGGCACAACTTGGTCTGGGGCATAGTTACAGCAGAGCAAAGGTGAAGTTTAATGTTAACCGTGTTGACAACATGGTTATTCAAG

upper sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G56110.1 (Arabidopsis thaliana), 3'ss of exon 2
tgatgagcttacgcattgctttttatatgcctaaattgttgtaaagctaaacgcctgctgtgcttaatttggcttt--accatgtgtccatgttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
         |  |   | |||| ||| ||  |||| | || |    ||    || |        |  ||||  ||   |  |    |   |||| || ||||  |  |||  | || ||  | || |||||  | |  || ||||||||||| || ||||||||||||||||| || || || ||||||||||| || ||||
--------gtgtgatctcctttctatgtgtttaaaatctttttgt-ctgtttgcttatctcatatggtttgtgttctcataaaaaatttctgtttat-gtagCCTGGTGATCTTGAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAACCGAGTGGATAACATGGTTATTCAAG

upper sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G12860.1 (Arabidopsis thaliana), 3'ss of exon 2
tgatgagcttacgcattgctttttatatgcctaaattgttgtaaagctaaacgcctgctgtgcttaatttggctttaccatgtgtccatgttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
                ||  |||| |||   |  |||     | | ||| ||   |  | ||||  ||| |   | |  ||       | |  | |||||  |  ||| ||||| || || |||||||| || |  |||||||||||||| || ||||||||||||||||| || || || ||||||||||| || ||||
---------------gtgtgttttttat-ttttgattacctaatacctacacatatttt-tgct--attcgtgctcaatatcatcttctttataatgtagCCTGGTGATTTGGAAAAAGCTCAACTTGGACTAGCTCATAGCTACAGCAGAGCAAAGGTGAAGTTCAATGTTAACCGGGTGGATAACATGGTTATTCAAG

upper sequence: GRMZM2G110233_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv17s0000g01720.t01 (Vitis vinifera), 3'ss of exon 2
----------------------tgatgagcttacgcattgctttttatatgcctaaattgttgtaaagctaaacgcctgctgtgcttaatttggctt-taccatgtgtccatgttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
                           |   | |   |  |||||| | |     ||   ||  |  |      |  |  | |    |||||  ||| ||  || | |     ||  ||||||  |   ||| | || |||||||||||||| ||||| || || |||||||| || ||||||||||||||||||||  | || ||||| ||||| || || |
gtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttattt---ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGAGCAAAGGTGAAGTTCAATGTGAACAGAGTCGATAATATGGTCATTCAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26557755|gb|CA829990.1|CA829990
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGCTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|211049346|gb|FL323595.1|FL323595
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|18450821|gb|BM429099.1|BM429099
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|20803431|gb|BQ294481.1|BQ294481
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTCGGAGAAGGCCCAACTTGGCCTGGGGCATAG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAG
EST: gi|26559620|gb|CA831855.1|CA831855
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|30031584|gb|CB833435.1|CB833435
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|84980362|gb|DW530711.1|DW530711
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|29543698|gb|CB604078.1|CB604078
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|30087070|gb|CB885278.1|CB885278
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|29130402|gb|CB381106.1|CB381106
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|213177969|gb|FM186729.1|FM186729
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|14717697|gb|BI245347.1|BI245347
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|22715748|gb|BU197940.1|BU197940
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|5296088|gb|AI782963.1|AI782963
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|15427341|gb|BI543163.1|BI543163
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|211213156|gb|FL322467.1|FL322467
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAAGCCCA-CTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|31557980|gb|CD527192.1|CD527192
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|15100491|gb|BI396282.1|BI396282
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|24934830|gb|CA453048.1|CA453048
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|28910643|gb|CB331541.1|CB331541
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|211009565|gb|FL317969.1|FL317969
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCC-AACTTGGCCTGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGG
EST: gi|28873547|gb|CB329522.1|CB329522
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|87157139|gb|DY401928.1|DY401928
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|32913216|gb|CF018028.1|CF018028
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|84980547|gb|DW530896.1|DW530896
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|29130368|gb|CB381072.1|CB381072
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
EST: gi|24934839|gb|CA453057.1|CA453057
EST:     TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAG                         GATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG
genomic: TGCTCCGCGGTGTCCGCCTCCACTTCGACCGTTTCATCAACGAGCTTAAGgtgtcgcctt ... ttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaaacgcctgctgtgcttaatttggctttaccatgtgtccatgttgattgtagGATTCTGACTTGGAGAAGGCCCAACTTGGCCTGGGGCATAGCTACAGCAGGGCTAAGGTGAAGTTCAATGTGAATCGTGTTGATAACATGGTGATCCAAG
                  ttaattt  TA-rich tract