Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG

Basic information

species Zea mays
transcript GRMZM2G110116_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g01910.1 (Oryza sativa), 3'ss of exon 2
caagcac-ctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtccc---atgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
 |   |  ||  || |||    |||| |||| | || |  |  |||  | | |  |  | | |     || |  | ||||   ||  |  ||   |  |||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||||||||||  | || | ||||| ||||||||||||||| |||
aagatatactgggcttgt--attttgggatccgatcttttaaacaatgtattgtgctgtggcctttggattcatattaatacttgttgtgcat--ttatggcagGAAGAAGAAGGCAGTTCACAAGACTACCACCACTGATGACAAGAGGCTTCAAAGCACCTTGAAAAGAGTAGGAGTGAACAACATTCCTGGTATCGAAGAG

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G12170.1 (Glycine max), 3'ss of exon 2
-caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtccc--atgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
    |||   ||    ||||| ||| |  | |||   || |  |||  |  | | |  | ||     | | |  || | |  |  |    |   |      || ||||||||||| || |||||||| || ||||| ||||||||  |||||||||||||| |||| || || |||| |||  |||| || | ||| ||||||
gtttgcagtcaa-ttcgttggctttattttttgtaattaaacacaaaat--gaatctgttgtgttgaaagttctcttaatgttttgtcttatgttcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G04380.1 (Glycine max), 3'ss of exon 2
caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaat----ttatgagggacaaaatgctggc---agGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
    |||  ||   |||||| ||| |  | | ||  | || |  |   |   |  |||  |    || | | |  |    |||||         ||| | |    || ||||||||||| || |||||||| || ||||| ||||||||  |||||||||||||| |||| || || |||| |||  |||| |||| ||| || |||
---tcactcaa-tttgttggctttttagtttttt--tggaattgaacacaaaatgcatc-tgttgtgttgaatgctctctttatgttttgtcttatgtttgttctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCTGCTATTGAAGAG

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G12180.1 (Glycine max), 3'ss of exon 2
caagcacctaagcctgttgggttt-gtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
   |||   ||    ||||| ||| ||  | | |   || |  |||  | |         ||   | | |  || | |  |  |    |   |      || ||||||||||| || |||||||| || ||||| ||||||||  |||||||||||||| |||| || || |||| |||  |||| || | ||| ||||||
tttgcagtcaa-ttcgttggctttagttttttataattaaacacaaaatgtatttgttgtgttgaaagttctcttaatgttttgtcttatgctcggtctagAAAGAAGAAGGCTGTCCACAAGACAACAACCACAGATGACAAAAGGCTTCAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCGGCTATTGAGGAG

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G73230.1 (Arabidopsis thaliana), 3'ss of exon 2
caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctgg---cagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
           |  |  |   ||| ||   | |   |  | |    || | |  ||||  |  |||| ||  || | | | |        |  ||     ||| ||||||||||| |||||||||||||| || |||||||||||| |||| ||||||||  | || ||  | || |  ||  ||||||| |  || || || 
-----------gtatactca-tttatgtcttttctgtgaatttgtgtttttg--ccatt-tttcatgtta--tattctctaaacattttgactctcatttcagAAAGAAGAAGGCTGTTCACAAGACCACTACAACCGATGACAAGAGGCTCCAGAGCACTCTTAAGAGAGTTGGAGTCAATTCCATTCCCGCCATTGAAGAA

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G17880.1 (Arabidopsis thaliana), 3'ss of exon 2
caagcacctaagcctgttgggtttgtgat-ctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
   | |   |    | ||       |     |||||| | | | | | | |    | ||  |    || ||   ||   ||  |        | || |||| ||||||||||| || ||||||||||  || || ||||||||| ||||||| |||||  | || || || || |  ||| ||||||| | ||| || || 
---gtatagagttttattcaaccaatttcattgttca-atacttagcattta---ctatgattt-gtgtta-tgaaaccattcgattt---ttacttgcagAAAGAAGAAGGCTGTGCACAAGACCAATACAACTGATGACAAGAGGCTTCAAAGCACTCTTAAGAGAATTGGAGTTAACTCCATTCCCGCTATTGAAGAA

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: EDO98665 (Chlamydomonas reinhardtii), 3'ss of exon 1
caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctg---gcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
        |  | | | |||    | | || || ||          || |||   ||  |           || ||    | ||| || | |||     |||||||||||||||| || |||||||||||  |||| || ||||||||| | || | |||| | ||  |  | || | ||||||||| || || |||||||||
-------gtgcggcggctggaggcgcgctcggtgcac-----tgctttttggggtcaccg-----------ctgatgcgcgcggggcatattgcaatgtgcagGAAGAAGAAGGCCGTGCACAAGACCACCTCCACTGACGACAAGCGGTTGCAAAACACCCTCAAGCGCCTGGGCGTGAACACCATCCCCGGCATCGAGGAG

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S28_196V6.1 (Physcomitrella patens), 3'ss of exon 2
caagcacctaagcctgt-tgggtttgtgatctgttcatagagtcaacttctggacccata-gtcccatgctaactaat-ttatgagggacaaaatgctgg-cagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
   |      |   |||   | |||||||   | ||   ||||      || | | |||  | || |||    |||   || | |    |||   ||||  |||||||||||| || |||||||||||||| ||||| || |||||| || | ||||||||||||||  |  |||| | |||||||||||| || || || |||
ttcgtctgctactttgtactgctttgtgag--gctctgggagtt--tccctagtctcatgtgccctatgtggtctacccttgtcaatttcaattggctgaacagGAAGAAGAAAGCTGTTCACAAGACCACCACCACTGACGACAAGAGGTTGCAGAGCACCTTGAAGCGACTCGGAGTGAACACCATTCCCGGAATTGAAGAG

upper sequence: GRMZM2G110116_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ21066 (Selaginella moellendorffii), 3'ss of exon 1
caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
                                        || ||  | |||    | | |   |   |      ||  ||||           | ||||||||||||||||||| ||||||||| |||||||||| |||||| || | || | |||  | || ||  | || |  |||||||| || || || ||||||
----------------------------------------gtaaagatttgggattagattggaagatt------ttggtgagaattctggcaatcgcagGAAGAAGAAGGCAGTGCACAAGACCGCGACCACCGACGACAAGAGGTTGCAAAACACGCTCAAGAGATTGGGCGTCAACACCATCCCCGGCATTGAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60358421|gb|DN225394.1|DN225394
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18163749|gb|BM333588.1|BM333588
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18168805|gb|BM338645.1|BM338645
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|13249820|gb|BG360725.1|BG360725
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18163839|gb|BM333678.1|BM333678
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCGCGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|14243267|gb|BG840942.2|BG840942
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|19822218|gb|BQ048242.1|BQ048242
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACAGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|60359568|gb|DN226541.1|DN226541
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|60352834|gb|DN219807.1|DN219807
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACAGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|16920329|gb|BM074603.1|BM074603
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|14529523|gb|BI096656.1|BI096656
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGA-GGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACAGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|32916051|gb|CF020863.1|CF020863
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACAACCACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|60342325|gb|DN209298.1|DN209298
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18169228|gb|BM339068.1|BM339068
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|17932218|gb|BM269178.1|BM269178
EST:     AGCATGCGCAG                         AAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18172205|gb|BM347593.1|BM347593
EST:     AGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|17931842|gb|BM268802.1|BM268802
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18167446|gb|BM337285.1|BM337285
EST:     AAAAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|17931329|gb|BM268295.1|BM268295
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGAAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18167682|gb|BM337522.1|BM337522
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|17932449|gb|BM269409.1|BM269409
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGAAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|18162584|gb|BM332423.1|BM332423
EST:     GCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: GCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
EST: gi|60357932|gb|DN224905.1|DN224905
EST:     AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAG                         GAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA
genomic: AAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 494

ATGAATGTGGAGAAGCTCAAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 511

ATGAATGTGGAGAAGCTCAAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 278

ATGAATGTGGAGAAGCTCAAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 343

ATGAATGTGGAGAAGCTCAAGAAGATGGCTGGCGCTGTACGCACCGGAGGGAAGGGCAGCATGCGCAGgtacctcctc ... atgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctggacccatagtcccatgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG
                       taactaatttatga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caagcacctaagcctgttgggtttgtgatctgttcatagagtcaacttctggacccatagtcccatgctaactaatttatgagggacaaaatgctggcagGAAGAAGAAGGCAGTTCACAAGACCACGACCACCGATGACAAGCGGCTTCAGAGCACCTTGAAAAGGATCGGGGGGAACACCATTCCTGGTATCGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG