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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacctccctgttctttctatattattctaatggaatactttgcaaaaccagtcagtaggattgttatgaagatgggctatttacaactctgttaatggttgtccatcagattctcataaagcaactgaagctcttgagcttatttattgatatgaaaactgacatgtttgatgaatgatgatcagATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAG

Basic information

species Zea mays
transcript GRMZM2G109651_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211512441|gb|FL330196.1|FL330196
EST:     CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACAT                         ATGTTGTGGTACATGTGGGAAGGGGTCT-GATCAGGAGGTATACACTGATG
genomic: CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACATgtgagacctc ... tgatgatcagATGTTGTGGTACATGTGGGAAGGT-TCTTGATCAGGAGGTATACACTGATG
EST: gi|76018273|gb|DT945443.1|DT945443
EST:     CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACAT                         ATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA
genomic: CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACATgtgagacctc ... tgatgatcagATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA
EST: gi|91051140|gb|EB161558.1|EB161558
EST:     CCTGTGCTGATTACTGCCCCTCCATAAAGGGACC-TGACAAAGGATACAT                         ATGTTGGGGGTACATGTGG
genomic: ACTGTGCTGATTACTGCCCCTCCATAAAGG-ACCCTGACAAAGGATACATgtgagacctc ... tgatgatcagATGTTGTGG-TACATGTGG
EST: gi|93017293|gb|EB642813.1|EB642813
EST:     CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACAT                         ATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA
genomic: CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACATgtgagacctc ... tgatgatcagATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA
EST: gi|4804552|gb|AI665574.2|AI665574
EST:     CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACAT                         ATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA
genomic: CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACATgtgagacctc ... tgatgatcagATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA
EST: gi|78027070|gb|DV495457.1|DV495457
EST:     CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACAT                         ATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA
genomic: CACTGTGCTGATTACTGCCCCTCCATAAAGGACCCTGACAAAGGATACATgtgagacctc ... tgatgatcagATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgagcttatttattgatatgaaaactgacatgtttgatgaatgatgatcagATGTTGTGGTACATGTGGGAAGGTTCTTGATCAGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAG
         ttatttattgatatga  TA-rich tract