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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgtaatgggaaatgtagttcccaaaaatttcatgatctcccctgttatttctctgctgttgttccccattgttcacgtcttttcttttttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG

Basic information

species Zea mays
transcript GRMZM2G109383_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 2
attgtaa-tgggaaatgtagttcccaaaaatt----tcatgatctcccctgttatttctctgctgttgttccccattgttcacgtcttttcttttttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
  ||||| |  ||||||   || |||          | |   | |   ||| ||||||  ||   || || |  ||  |||   || |||||||| ||     ||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||
cctgtaagttagaaatgctattaccactttccgtaattaaagtattttctgatatttcattgtcatt-tttcatatctttc-tatcatttcttttcttac---agGTGCAACCATTGTTGTGTCTGGTGATGGCCGCTATTTCTCGAAGGATGCTGTTCAG

upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G23190.1 (Arabidopsis thaliana), 3'ss of exon 2
attgtaatgggaaatgtagttcccaaaaatttcatgatctcccctgttatttctctgctgttgttccccattgttcacgtcttttcttttttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
              ||   ||      |   ||||  |  |  ||   |  | ||||||  |       |||  | |    || |  ||  | | |  |||||| ||| |||| |||||||||||||| || |||| |||||| ||||||||||||
-------------gtgagatttttttcatactcatcttagcttctcagagatatctgctcattcgaaaaattcatgagtgtttattgttcatatgtgcagGTGCCACACTTGTGGTCTCTGGTGATGGTCGTTATTACTCAAAGGATGCTGTTCAG

upper sequence: GRMZM2G109383_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 3'ss of exon 3
attgtaatgggaaatgtagttcccaaaaatttcat---gatctcccctgttatttctctgctg--ttgttccccattgttcacgtcttttcttttttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
       |  |     ||  || ||  | |||  |   |||||    | |||| | |    ||  |         |  ||  |   |||   ||| |   |  |||    ||| ||||||| ||||||||||||||||||||||| || |||||  |||||
-----cttttgtttcatacctcacatgatttttgttttgatctaatttattatctgttaaatgggtcagatttactcttttcctagtttatgtttgtgcatgcagGCATGACACTTGTTGTTTCTGGTGATGGCCGCTATTTCTCGAAGGATGCCATTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211503092|gb|FL335421.1|FL335421
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211183449|gb|FL327212.1|FL327212
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211163859|gb|FL345453.1|FL345453
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211399579|gb|FL345595.1|FL345595
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|32921738|gb|CF026550.1|CF026550
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211103216|gb|FL316257.1|FL316257
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|30088269|gb|CB886474.1|CB886474
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211519065|gb|FL311544.1|FL311544
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|8368954|gb|BE051899.1|BE051899
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211198397|gb|FL354123.1|FL354123
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211514341|gb|FL311514.1|FL311514
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211520184|gb|FL353420.1|FL353420
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211038815|gb|FL358195.1|FL358195
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211040491|gb|FL324026.1|FL324026
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211354596|gb|FL343940.1|FL343940
EST:     GAACTTTGTCCAATCAACATTCAAAGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAGAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211087099|gb|FL367278.1|FL367278
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|6536595|gb|AW224908.1|AW224908
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGG
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211016345|gb|FL361191.1|FL361191
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCATCAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|32921512|gb|CF026324.1|CF026324
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|19822139|gb|BQ048163.1|BQ048163
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCCGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|148974651|gb|EE025449.2|EE025449
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211056237|gb|FL359926.1|FL359926
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|148951896|gb|EC897671.2|EC897671
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|32909658|gb|CF014470.1|CF014470
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|28930952|gb|CB334313.1|CB334313
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211353999|gb|FL313767.1|FL313767
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149109604|gb|EE190283.2|EE190283
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211157734|gb|FL360814.1|FL360814
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGCCCCAC                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|60351436|gb|DN218409.1|DN218409
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211149502|gb|FL328552.1|FL328552
EST:     GAACTTTATCCAATCAACATTCAATGCCCTTCCTGNGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211088149|gb|FL307534.1|FL307534
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211125281|gb|FL351286.1|FL351286
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211133200|gb|FL313078.1|FL313078
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|67025909|gb|CO454658.1|CO454658
EST:     CCAATCTACCTTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: CCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211472612|gb|FL331154.1|FL331154
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|20208242|gb|BQ134331.1|BQ134331
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCCGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAG                         GTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG
genomic: GAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 313

GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 427

GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 405

GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 823

GTTACTGTATTCCAGCAGCCCCATTATCTGCAGAACTTTGTCCAATCAACATTCAATGCCCTTCCTGTGGATCAAGTAAGAGgtaacatgct ... ttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatttctctgctgttgttccccattgttcacgtcttttcttttttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG
               ttgttccccattgttc  CT-rich tract
                                  tcttttcttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgtaatgggaaatgtagttcccaaaaatttcatgatctcccctgttatttctctgctgttgttccccattgttcacgtcttttcttttttttttttagGTGCAACAATTGTTGTCTCTGGTGATGGCCGCTATTTCTCAAAAGATGCTGTTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - ccaaaaat
- - - - - - - - - - - - - - - - catgatc
- - - - - - - - - - - - - - - - - - - -tcccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgttg