1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctggcatggtgtatcatttgtgttacaactcaaacattgtttgagttgcttatacagtcgcttatattgctctaaatgattgtctattttcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGACATTCAAGGAATACCCTGGGAGCAGATAAACATAACCCGTAAAAAATACA
species | Zea mays |
transcript | GRMZM2G109039_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCA AATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGACEST: gi|211150113|gb|FL386529.1|FL386529
genomic: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCAgtgtgtttcc ... tcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGAC
EST: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCA AATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGAC
genomic: AGCAAGGGATTAGGGATTCTGATGTGGAAGATAATGATTATGGACAACCAgtgtgtttcc ... tcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGAC
gttgcttatacagtcgcttatattgctctaaatgattgtctattttcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGACATTCAAGGAATACCCTGGGAGCAGATAAACATAACCCGTAAAAAATACA
ctctaaa putative branch site (score: 660)
ttgtctattttcccct putative PPT
taaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctggcatggtgtatcatttgtgttacaactcaaacattgtttgagttgcttatacagtcgcttatattgctctaaatgattgtctattttcccctttagAATGATAAGATCCCAGATACTTCATCAGCAGATGCAAGAAAAGGAAGGGACATTCAAGGAATACCCTGGGAGCAGATAAACATAACCCGTAAAAAATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - -catggtg
- - - - - - - - - ttgtgtt
- - - - - - - - - - - - - -aactcaa
- - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - agttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgattg