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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttccttgccctctccctcctccttttgccccaatcctgtcgcgtagcattagtggtaaatgagctttgtttcttcgctacgcgtgtagGTCCTCGAGGTCGGGTGTGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGGGAGGGCGTCGCCGGCGGAATCACCTGCGTTGACCTGTCCCCCGTCGCCG

Basic information

species Zea mays
transcript GRMZM2G109032_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109032_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os11g35340.1 (Oryza sativa), 3'ss of exon 2
-----------------------------------------gtgcgttccttgccctctccctcctccttttgccccaatcct---gtcgcgtagcattagtggtaaatgagctttgttt--cttcgctacgcgtgtagGTCCTCGAGGTCGGGTGTGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGGGAGGGCGTCGCCGGCGGAATCACCTGCGTTGACCTGTCCCCCGTCGCCG
                                          |    || |||            |  ||||       | ||        | ||  |  | |  ||||||  |    |    ||||    |||  ||||| || ||||| |||||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
gttcgtctcgcctcctctcttccccccacgaatccctcctgatatcatctttgggtggggggaatttgttttttgtgggttcttgaaatttgaagtctgggggtgaaatgaaatcatctcgaattcgtgttgcgc-tagGTTCTTGAGGTTGGGTGTGGCAACTCGCGGCTCGGGGAGGAGCTGCTGCGGGAGGGCGTCGCCGGCGGCATCACCTGCGTTGACCTCTCGCCCGTCGCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211091486|gb|FK999634.1|FK999634
EST:     TCTCGCACTTCCGCCACCTCCTCGCGCCGCTCCTCTCCCCGTCCCTCTCG                         GTCCTCGAGGTCGGGTGCGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGG
genomic: TCTCGCACTTCCGCCACCTCCTCGCGCCGCTCCTCTCCCCGTCCCTCTCGgtgcgttcct ... acgcgtgtagGTCCTCGAGGTCGGGTGTGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGG
EST: gi|211226341|gb|FL315377.1|FL315377
EST:     TCTCGCACTTCCGCCACCTCCTCGCGCCGCTCCTCTCCCCGTCCCTCTCG                         GTCCTCGAGGTCGGGTGCGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGG
genomic: TCTCGCACTTCCGCCACCTCCTCGCGCCGCTCCTCTCCCCGTCCCTCTCGgtgcgttcct ... acgcgtgtagGTCCTCGAGGTCGGGTGTGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGG
EST: gi|148957467|gb|EC903543.2|EC903543
EST:     TCTCGCACTTCCGCCACCTCCTCGCGCCGCTCCTCTCCCCGTCCCTCTCG                         GTCCTCGAGGTCGGGTGTGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGG
genomic: TCTCGCACTTCCGCCACCTCCTCGCGCCGCTCCTCTCCCCGTCCCTCTCGgtgcgttcct ... acgcgtgtagGTCCTCGAGGTCGGGTGTGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtcgcgtagcattagtggtaaatgagctttgtttcttcgctacgcgtgtagGTCCTCGAGGTCGGGTGTGGCAACTCGCGGCTTGGCGAGGATCTCCTGCGGGAGGGCGTCGCCGGCGGAATCACCTGCGTTGACCTGTCCCCCGTCGCCG
                      taaatga  TA-rich tract