1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taacattacttggtttggttaagggtttacattaattttatcttgcttgtttagttcaagatgcaaggtttcctgacagaattgctcttctgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCGGTCTGTGTATGTTGGAAAT
species | Zea mays |
transcript | GRMZM2G108919_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGCAAG GATGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCEST: gi|9731847|gb|BE510599.1|BE510599
genomic: CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGaggaggccgc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: AAGGAGATGCAAG GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCEST: gi|211180712|gb|FL314038.1|FL314038
genomic: AAGGAGATGGAGGaggaggccgc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGCAAG GATGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCEST: gi|7135303|gb|AW498018.1|AW498018
genomic: CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGAAGGAGATGGAGGaggaggccgc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: AAGGAGATGCAAG GAGGTGACCCTAGTATATCTACAGNTGAGGCGAAGGAGCAGGTGGATGCCCEST: gi|211270122|gb|FL340668.1|FL340668
genomic: AAGGAGATGGAGGaggaggccgc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: -TTCAGGAGCTTGACGAGATGAAGCGCAA-STGANAGGAGATGCAAG GATGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCEST: gi|60399607|gb|DN232418.1|DN232418
genomic: CTTCAGGAGCTTGACGAGATGAAGCGCAAGCTGA-AGGAGATGGAGGaggaggccgc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: AGGAGATGCAAG GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCEST: gi|60351908|gb|DN218881.1|DN218881
genomic: AGGAGATGGAGGaggaggccgc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
EST: AAGGAGATGCAAG GAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
genomic: AAGGAGATGGAGGaggaggccgc ... tgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCC
cttgtttagttcaagatgcaaggtttcctgacagaattgctcttctgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCGGTCTGTGTATGTTGGAAAT
tcctgac putative branch site (score: 2)
ttgctcttctgtttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacattacttggtttggttaagggtttacattaattttatcttgcttgtttagttcaagatgcaaggtttcctgacagaattgctcttctgttttgcagGAGGTGACCCTAGTATATCTACAGCTGAGGCGAAGGAGCAGGTGGATGCCCGGTCTGTGTATGTTGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA