1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaacacattttgttatgcttactcccatttgtacttctgagttctgtcttagttgttcttactggtgtttgaaaccattgcttatgttatacttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
species | Zea mays |
transcript | GRMZM2G108739_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|37361488|gb|CF602777.1|CF602777
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18649335|gb|BM498154.1|BM498154
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|19058669|gb|BM737336.1|BM737336
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18450451|gb|BM428729.1|BM428729
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|32936153|gb|CF040965.1|CF040965
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GAGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|32937762|gb|CF042581.1|CF042581
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18649482|gb|BM498301.1|BM498301
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18649277|gb|BM498096.1|BM498096
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18450400|gb|BM428678.1|BM428678
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCCCTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211120940|gb|FL408170.1|FL408170
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211288445|gb|FL410142.1|FL410142
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|5055707|gb|AI734594.1|AI734594
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|31664378|gb|CD573103.1|CD573103
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211490322|gb|FL377881.1|FL377881
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211132915|gb|FL391880.1|FL391880
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211156337|gb|FL380332.1|FL380332
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|30306470|gb|CD001143.1|CD001143
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGGGCACTATTGAGTCTGATCCTG GGGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211102481|gb|FL395954.1|FL395954
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|93013476|gb|EB638996.1|EB638996
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211392419|gb|FL378726.1|FL378726
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|19822579|gb|BQ048603.1|BQ048603
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|76929348|gb|DV171972.1|DV171972
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18649532|gb|BM498351.1|BM498351
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCNCTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211488685|gb|FL428190.1|FL428190
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211045017|gb|FL382448.1|FL382448
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211474315|gb|FL411624.1|FL411624
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18650000|gb|BM498819.1|BM498819
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18450596|gb|BM428874.1|BM428874
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|18649234|gb|BM498053.1|BM498053
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|78092543|gb|DV520917.1|DV520917
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|78084624|gb|DV513017.1|DV513017
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211491468|gb|FL425155.1|FL425155
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|19822485|gb|BQ048509.1|BQ048509
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAGEST: gi|211201385|gb|FL369966.1|FL369966
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
EST: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTG GTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
genomic: CTTCAGTGGCTTCGCAAGGATGTCCTGGTGCACTATTGAGTCTGATCCTGgtgagttttc ... acttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
gtcttagttgttcttactggtgtttgaaaccattgcttatgttatacttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
ttcttac putative branch site (score: 142)
ttatgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacacattttgttatgcttactcccatttgtacttctgagttctgtcttagttgttcttactggtgtttgaaaccattgcttatgttatacttgagcagGTGTGTTCACTGAGCTGATTCAGCAAATGCAAGTGAAAGGTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
aaacaca
- - - -ttttgtt
- - - - - - - -tgcttac
- - - - - - - - - - - - ccatttg
- - - - - - - - - - - - - - - - -cttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg