1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcttgcaagagctattatgatcttgttaattttctagcagtagtacatgaagtaacattatagtttcatttggattatatatattcttttttctaacagGAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAAAGATATGGAATTTGCCGTATCATCCCACCATCTTCTTGGAGACCTCCAT
species | Zea mays |
transcript | GRMZM2G108589_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAG GAATTTAAGGATCCAATTGGGTACATTGCTAGCATTCGGCCGCAAGCAGAAEST: gi|76286850|gb|DV026418.1|DV026418
genomic: CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAGgtttgtctct ... tttctaacagGAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAA
EST: CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAG GAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAA
genomic: CACAGAGACCTGAAATCGATGATGCTCCCGTTTTCGCTCCGACAGAAGAGgtttgtctct ... tttctaacagGAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAA
acatgaagtaacattatagtttcatttggattatatatattcttttttctaacagGAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAAAGATATGGAATTTGCCGTATCATCCCACCATCTTCTTGGAGACCTCCAT
aagtaac putative branch site (score: 34)
tatattcttttttct putative PPT
attatagtttcatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttgcaagagctattatgatcttgttaattttctagcagtagtacatgaagtaacattatagtttcatttggattatatatattcttttttctaacagGAATTTAAGGATCCAATCGGGTACATTGCTAGCATTCGGCCGCAAGCAGAAAGATATGGAATTTGCCGTATCATCCCACCATCTTCTTGGAGACCTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
ttcttgc
- - - - - - - - - - - - - - - - - - -gcagtag
- - - - - - - - - - - - - - - - - - - - - - -acatgaa