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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgatgttcagtaacatgtcataactagtgacgtgaacatatcagattccatttcctttgttttgtcctgttgacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

Basic information

species Zea mays
transcript GRMZM2G107807_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107807_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 3'ss of exon 2
actgatgttcagtaacatgtcataactagtgacgtgaacatatcagattccatttcctttgttttgtcctgtt---gacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
| |||||    ||| |||  ||| || |||    ||   | || |  ||   || ||||  || |||| |  |   |||||| |  | |||| ||| |  |||||||||||||| ||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||
aatgatgaatggta-cattacatcacaagtagtctgttga-atgaagttatcttcccttgtttatgtcatagtaatgacatagtgatctcctattttt-tcagAGAAAGAGAACCTGTGCCTTTATGGATTGCCCAATGAGACCTGGGACGTGACCCTTCCAGCTGAGGAAGTACCTCCTGAACTTCCAGAACCAGCACTGGG

upper sequence: GRMZM2G107807_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT2G02470.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------------------------------------actgatgttcag-taacatgtcat-aactagtgacgtgaacatatcagatt------ccatttcctttgttttgtcctgttgacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
                                                                             | |||| || |   ||||  |  | | |||  |   | | ||    ||       | |   || |||  | |    || |  | |||| ||| | ||||||  |||||| ||||| ||||| || |||||  | ||||||||||| |||||||||| ||| || | ||||||||| |||||||||||||| ||||||||  | ||
gtgagttatttcttcacaacttttaaaaaattagtcttgcttagcttctatagtttctagtgaaatgttttgttgaagttgttgagcttgtatgttgttgaattgtgttggttaaagattgagttagttagtcctcctctgtgtggtttttctttaaggtgtttcattcttgtttatgt-agAGAAGGAGAATTTGTGTCTCTATGGACTTCCAAATGAGACATGGGAGGTTAATCTACCCGTTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCTTTAGG

upper sequence: GRMZM2G107807_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT1G14510.1 (Arabidopsis thaliana), 3'ss of exon 2
---actgatgttcagtaacatgtcataactagtgacgtgaacatatcagattccatttcctttgttttgtcctgttgacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
     | |   |  || | || |  || |||  || |     |  ||   ||    || || | | ||| | | ||     ||| | ||  ||  ||   ||||||| || |||||||| ||||||||  | ||||||||||| |||||||||| |||||| | |||||| || |||||||||||||| ||||||||  | ||
ctttttaagtgtttgtgagat-ttgtacctaa-gatgaagttagttctctttgtggtttctct-tcttgacttcttagtgaattacgttttttgctaatgcagAGAAGGAAAACTTGTGTCTTTATGGACTTCCAAATGAGACATGGGAGGTTAATCTTCCCGTTGAGGAGGTCCCTCCTGAGCTTCCTGAACCAGCGTTAGG

upper sequence: GRMZM2G107807_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv12s0035g01980.t01 (Vitis vinifera), 3'ss of exon 2
---------actgatgttcagtaacatgtcataactag-tgacgtgaacatatcagattccatttcctttgttttgtcctgttgacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
         | | |  ||    |  ||  ||||  ||  | | ||   ||||   || | ||  |   || |||||   ||||   | ||||      || ||||   |||||| ||||||||||| || |||||  | ||||||||||| ||||| ||||  || || | |||||| ||||||||||||||||||||||||||| | ||
ttattttatattcactttttacattat-ccatatatatcttatgttggcataaatgagtgcaacttgcttattttgga-tgtttgtaaattt-----gttcttat---agAGAAGGAGAACTTGTGTCTGTATGGACTTCCAAATGAGACATGGGAAGTTAACCTGCCTGTTGAGGAGGTACCTCCTGAGCTTCCAGAACCAGCATTAGG

upper sequence: GRMZM2G107807_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ23237 (Selaginella moellendorffii), 3'ss of exon 2
----------------------------actgatgttcagtaacatgtcataactagtgacgtgaacatatcagattccatttcctttgttttgtcctgttgacatatttctttccttttt-atgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
                            | ||  || |    |||||| |||  || ||    |  | | |         |    ||   ||||   | | |    | || ||  ||| || |  |||||||| || || ||||||||||||||| | ||  | |||||||||||||| | ||||||||| |||||||| || || ||||| || || ||||| || ||
gtttgtactctttcttatcctttagtctagtgtggtgctactacatgt-atatataatggtcgggtcttttgtttaagtgtgatattgactttggtgtatggtgtcactttttctcttattgactccagAGAAGGAAAATTTGTGCCTTTATGGTCTCCCCGACGAGACTTGGGAGGTGAATCTTCCAGCCGAGGAAGTGCCGCCGGAGCTCCCTGAGCCAGCGCTCGG

upper sequence: GRMZM2G107807_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ25244 (Selaginella moellendorffii), 3'ss of exon 2
----------------------------actgatgttcagtaacatgtcataactagtgacgtgaacatatcagattccatttcctttgttttgtcctgttgacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
                            | ||  || |    |||||| |||  || ||    |  | | |         |    ||   |||| | | | |    | || || | | || |  |||||||| ||||| ||||||||||||||| | ||  | |||||||||||||| | ||||||||| |||||||| || || ||||| || || ||||| || ||
gtttgtcctctttcttatcctttagtctagtgtggtgctactacatgt-atatataatggtcgggtcttttgtttaagtgtgatattgactttggcgtatggtgtcactttttccttattgactccagAGAAGGAGAATTTGTGCCTTTATGGTCTCCCCGACGAGACTTGGGAGGTGAATCTTCCAGCCGAGGAAGTGCCGCCGGAGCTCCCTGAGCCAGCGCTCGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131977|gb|FL391860.1|FL391860
EST:     ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211456087|gb|FL381465.1|FL381465
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211533316|gb|FL400721.1|FL400721
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211518080|gb|FL375342.1|FL375342
EST:     ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211448349|gb|FL416390.1|FL416390
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211006471|gb|FL416472.1|FL416472
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211032021|gb|FL382023.1|FL382023
EST:     ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211275133|gb|FL388209.1|FL388209
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211368566|gb|FL387073.1|FL387073
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211490133|gb|FL369790.1|FL369790
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211147466|gb|FL403065.1|FL403065
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211245223|gb|FL396979.1|FL396979
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211118465|gb|FL397828.1|FL397828
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211017612|gb|FL417337.1|FL417337
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211533630|gb|FL412547.1|FL412547
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211284193|gb|FL390126.1|FL390126
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211487237|gb|FL369763.1|FL369763
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211080228|gb|FL420006.1|FL420006
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|71449245|gb|DR830295.1|DR830295
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211148706|gb|FL387802.1|FL387802
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211394901|gb|FL373451.1|FL373451
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|9825085|gb|BE575272.1|BE575272
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211487550|gb|FL382355.1|FL382355
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211481948|gb|FL389371.1|FL389371
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|78104107|gb|DV522525.1|DV522525
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211481949|gb|FL389372.1|FL389372
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|88752364|gb|DY536505.1|DY536505
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGC-AAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211453813|gb|FL376134.1|FL376134
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|89250768|gb|DY622554.1|DY622554
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211022044|gb|FL376173.1|FL376173
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211153562|gb|FL410840.1|FL410840
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211114612|gb|FL414255.1|FL414255
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211453711|gb|FL371226.1|FL371226
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGGAGGTT
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGG-AGGTT
EST: gi|211379859|gb|FL407567.1|FL407567
EST:     ATGT-GAGAAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAG-AAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211493579|gb|FL394425.1|FL394425
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211046047|gb|FL423450.1|FL423450
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|76285557|gb|DV025125.1|DV025125
EST:     TTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: TTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211518311|gb|FL387235.1|FL387235
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211449442|gb|FL371194.1|FL371194
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211378993|gb|FL369248.1|FL369248
EST:     ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211481796|gb|FL382333.1|FL382333
EST:     ATGTG-AGAAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAA-GTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211419061|gb|FL425551.1|FL425551
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211178078|gb|FL404392.1|FL404392
EST:     ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211326305|gb|FL423243.1|FL423243
EST:     ATGTGAAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGGAGGTT
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGG-AGGTT
EST: gi|71444897|gb|DR825947.1|DR825947
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211090109|gb|FL396342.1|FL396342
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|148935253|gb|EC879290.2|EC879290
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211059742|gb|FL378981.1|FL378981
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211239004|gb|FL420053.1|FL420053
EST:     ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211111987|gb|FL388631.1|FL388631
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211321008|gb|FL370062.1|FL370062
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211282994|gb|FL428458.1|FL428458
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|71433177|gb|DR814227.1|DR814227
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211036769|gb|FL376251.1|FL376251
EST:     ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCMTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211501842|gb|FL388425.1|FL388425
EST:     ATGTGAAGAAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAA-GTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211461444|gb|FL402438.1|FL402438
EST:     ATGTGGAGAAGTTCTATCAGCAGTGYGATCCAG                         AGAAAGAGAACNTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGATGGTT
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGA-GGTT
EST: gi|211490417|gb|FL381910.1|FL381910
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211439565|gb|FL408946.1|FL408946
EST:     ATGTG-AGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211401195|gb|FL425442.1|FL425442
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAACAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTT
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAA-AGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTT
EST: gi|211187659|gb|FL416607.1|FL416607
EST:     ATGTGAAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|91873364|gb|EB403321.1|EB403321
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|91055582|gb|EB166000.1|EB166000
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211147119|gb|FL374600.1|FL374600
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211266773|gb|FL410563.1|FL410563
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211429590|gb|FL426785.1|FL426785
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|22714717|gb|BU197516.1|BU197516
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211317278|gb|FL392927.1|FL392927
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211288132|gb|FL391421.1|FL391421
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211046046|gb|FL423449.1|FL423449
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
EST: gi|211516346|gb|FL407294.1|FL407294
EST:     ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG                         AGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA
genomic: ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 1355

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 376

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 376

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG


Block sizes: 36 (upstream exon), 49 (downstream exon)
Score: 236

ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAGgtgacgcgcc ... tttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattccatttcctttgttttgtcctgttgacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG
                        tgttgac  putative branch site (score: 236)
                                tatttctttccttttt  CT-rich tract
                               atatttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgatgttcagtaacatgtcataactagtgacgtgaacatatcagattccatttcctttgttttgtcctgttgacatatttctttcctttttatgccagAGAAAGAGAACTTGTGCCTTTATGGTTTGCCAAATGAGACTTGGGAGGTTACTCTTCCAGCTGAGGAAGTACCTCCTGAGCTTCCAGAACCAGCACTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT