1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagattccttcccgctccaaatccccgcttcttcacttgctcttggacgtgctctcgcgcgtggtccttcgattcgggtcaagggattcgttcgcctcgattgatatgacgctcaccctgatgaccgctcctccagGAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTTCGCTGCCGGGAGCAATGGAGACGCTGGGGAGGCAGCTGCTGCCGCGAAG
species | Zea mays |
transcript | GRMZM2G107473_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTTCGGGGGTCAGGTCACCGAGGAGGAGGCCGACAGCCTCACCAAGAG GAAGCCGTGMTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTTEST: gi|211131492|gb|FL330792.1|FL330792
genomic: GTGTTCGGGGGTCAGGTCACCGAGGAGGAGGCCGACAGCCTCACCAAGAGgtcagattcc ... gctcctccagGAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTT
EST: GTGTTCGGGGGTCAGGTCACCGAGGAGGAGGCCGACAGCCTCACCAAGAG GAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTTEST: gi|71441673|gb|DR822723.1|DR822723
genomic: GTGTTCGGGGGTCAGGTCACCGAGGAGGAGGCCGACAGCCTCACCAAGAGgtcagattcc ... gctcctccagGAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTT
EST: GTGTTCGGGGGTCAGGTCACCGAGGAGGAGGCCGACAGCCTCACCAAGAG GAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTT
genomic: GTGTTCGGGGGTCAGGTCACCGAGGAGGAGGCCGACAGCCTCACCAAGAGgtcagattcc ... gctcctccagGAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTT
agggattcgttcgcctcgattgatatgacgctcaccctgatgaccgctcctccagGAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTTCGCTGCCGGGAGCAATGGAGACGCTGGGGAGGCAGCTGCTGCCGCGAAG
ccgctcctcc CT-rich tract
attgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagattccttcccgctccaaatccccgcttcttcacttgctcttggacgtgctctcgcgcgtggtccttcgattcgggtcaagggattcgttcgcctcgattgatatgacgctcaccctgatgaccgctcctccagGAAGCCGTGCTCCGCGCCCAAGTGGAAGGAGATGACTGGGAGCGGCATTTTCGCTGCCGGGAGCAATGGAGACGCTGGGGAGGCAGCTGCTGCCGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC