1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tccaaatcttactattggattccttgtcttagcgctctcaatgggagttctaacttcctggttataaagtgatgttaacttcctaaatgaaattgctcagGTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATCACTAAGATCACACCTTCAACAAGAGTTGCTCTTCGGAATGACAGCTATA
species | Zea mays |
transcript | GRMZM2G107362_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGGTGAGGTGGTGAAGGTCATGGGGAAATCAAAGGTTCTGGTGAAG GTACATCCCGAAG-CAAATATGTGGTGGATATAGATAAGAGCATTGATATCEST: gi|60398970|gb|DN231786.1|DN231786
genomic: ATGTTGGTGAGGTGGTGAAGGTCATGGGGAAATCAAAGGTTCTGGTGAAGgtaattttgc ... aattgctcagGTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATC
EST: ATGTTGGTGAGGTGGTGAAGGTCATGGGGAAATCAAAGGTTCTGGTGAAG GTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATCEST: gi|166527886|gb|EG161920.1|EG161920
genomic: ATGTTGGTGAGGTGGTGAAGGTCATGGGGAAATCAAAGGTTCTGGTGAAGgtaattttgc ... aattgctcagGTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATC
EST: TCATGGGGAAATCAAAGGTTCTGGTGAAG GTACATCCTGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATCEST: gi|211065265|gb|FL146776.1|FL146776
genomic: TCATGGGGAAATCAAAGGTTCTGGTGAAGgtaattttgc ... aattgctcagGTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATC
EST: ATGTTGGTGAGGTGGTGAAGGTCATGGGGAAATCAAAGGTTCTGGTGAAG GTACATCCCGAAG-CAAATATGTGGTGGATATAGATAAGAGCATTGATATC
genomic: ATGTTGGTGAGGTGGTGAAGGTCATGGGGAAATCAAAGGTTCTGGTGAAGgtaattttgc ... aattgctcagGTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATC
agttctaacttcctggttataaagtgatgttaacttcctaaatgaaattgctcagGTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATCACTAAGATCACACCTTCAACAAGAGTTGCTCTTCGGAATGACAGCTATA
taaatgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaatcttactattggattccttgtcttagcgctctcaatgggagttctaacttcctggttataaagtgatgttaacttcctaaatgaaattgctcagGTACATCCCGAAGGCAAATATGTGGTGGATATAGATAAGAGCATTGATATCACTAAGATCACACCTTCAACAAGAGTTGCTCTTCGGAATGACAGCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA